View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12956_high_4 (Length: 518)
Name: NF12956_high_4
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12956_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 244 - 508
Target Start/End: Original strand, 1846567 - 1846831
Alignment:
| Q |
244 |
aaagcagaaccagaaacaaaaggagaacaaacccgcaaaaaagactgggaagtctaatgttactgtgctggatgagtaagagtttttattgaataa-cta |
342 |
Q |
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| T |
1846567 |
aaaggagaaccagaaacaaaaggagaacaaacccgcaaaaa-gactgggaagtctaatgttactgtgctggatgcgtaagagtttttattgaataaacta |
1846665 |
T |
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| Q |
343 |
taatgtcagttgcattgctccttttatttgcaaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgta |
442 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1846666 |
taatatcagttgcattgctccctttatttgcaaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgta |
1846765 |
T |
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| Q |
443 |
ggaaacccattatgcagatttcattaatgttcgtgatacttttatgcaattgttttcgcctctctg |
508 |
Q |
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| T |
1846766 |
ggaaacccattatgcggatttcattaatgttcgtgatacttttatgcaattgttttcgcctctctg |
1846831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1846352 - 1846570
Alignment:
| Q |
1 |
attattcgatttcgattaaattgtacgtatttatttgtaatggcacttgtgaggtctgaactctgttgaattagttgttgatgtttttgtaagttagata |
100 |
Q |
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| T |
1846352 |
attattcgatttcgataaaattgtacgtatttatttgtgatggcacttgcgaggtctgaactctgttgaattagttgttgatgtttttgtaagttagata |
1846451 |
T |
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| Q |
101 |
agattttattcataatat---caacactttcattctggcattgtaaatgannnnnnnnnnnnnnncttgataatcagcctgaaaatggagatgatccagc |
197 |
Q |
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| T |
1846452 |
agattttattcataatatcaacaacactttcattctggcattgtaaatga-tttttgctttttttcttgataatcagcctgaaaatggagatgatccagc |
1846550 |
T |
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| Q |
198 |
aaagcagtcaaagaaaaaag |
217 |
Q |
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| T |
1846551 |
aaagcagtcaaagaaaaaag |
1846570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 1870407 - 1870475
Alignment:
| Q |
225 |
agctaaatctgagtctcataaagcagaaccagaaacaaaaggagaacaaacccgcaaaaaagactgggaa |
294 |
Q |
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| T |
1870407 |
agctaaatctgagtctcagaaggcagaaacagaaacaaaaggagaacaagcccacaaaaaa-actgggaa |
1870475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 1870231 - 1870277
Alignment:
| Q |
169 |
aatcagcctgaaaatggagatgatccagcaaagcagtcaaagaaaaa |
215 |
Q |
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| T |
1870231 |
aatcagcctgaaaatggagataatccagcaaagcaatcgaagaaaaa |
1870277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 21778405 - 21778350
Alignment:
| Q |
374 |
aaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctata |
434 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
21778405 |
aaaatttcatttaagatct-----tgatatcatgattctcactatgccatgaatttctata |
21778350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 43863560 - 43863513
Alignment:
| Q |
400 |
atatcatgattctcactatgccatgaatttctataagagcgtaggaaa |
447 |
Q |
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| T |
43863560 |
atatcatgattctcactatgatatgaatttctataaaagagtaggaaa |
43863513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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