View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12956_high_5 (Length: 321)

Name: NF12956_high_5
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12956_high_5
NF12956_high_5
[»] chr4 (1 HSPs)
chr4 (13-302)||(55940696-55940986)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 55940696 - 55940986
Alignment:
Q  13 aatatttatccccaggggcttactgaaaatataaatgcagagtctggtccagaagaaagcaaaataatagactgataaaaacaggtaagcatgaagttac 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55940696 aatatttatccccgggggcttactgaaaatataaatgcagagtctggtccagaagaaagcaaaataatagactgataaaaacaggtaagcatgaagttac 55940795  T
Q  113 tatcctacgttgaagtatatatgggattgcactgaaaacaataattctttgaacattgaaataggttttataacctatgaagcacaaacacagattcgga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55940796 tatcctacgttgaagtatatatgggattgcactgaaaacaataatggtttgaacattgaaataggttttataacctatgaagcacaaacacagattcgga 55940895  T
Q  213 caccgaacgttctcagaaaggaatttaattccaataatttcataaacaatgaagcaca-acgctttgcggattaaacgtgttctagtgtcg 302  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55940896 caccgaacattctcagaaaggaatttaattccaataatttcataaacaatgaagcacagacgctttgcggattaaacgtgttctagtgtcg 55940986  T

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