View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12956_low_1 (Length: 785)
Name: NF12956_low_1
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12956_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 131 - 768
Target Start/End: Complemental strand, 27312009 - 27311372
Alignment:
| Q |
131 |
gaccaccatgacaacaaccaacaacagcataatgaaaagggaatgctaaaagacgaaactcaagcacagcaataagaccaatgctcatcttctccagcaa |
230 |
Q |
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| T |
27312009 |
gaccaccatgacaacaaccaacaacagcataatgaaaagggaatgctaaaagacgaaactcaagcacagcaataagaccaatgctcatcttctccagcaa |
27311910 |
T |
|
| Q |
231 |
cagaagtagcagcagaagctgaatctgcactgaaatcatcaccagaacagtagtaaaaaccatcattgttagtgacagcattcaagcaacaagccgatga |
330 |
Q |
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| T |
27311909 |
cagaagtagcagcagaagctgaatctgcactaaaatcatcaccagaacagtagtaaaaaccatcattgttagtgacagcattcaagcaacaagccgatga |
27311810 |
T |
|
| Q |
331 |
tgaaaccagataaggcatgttatcaaaggatcgagctagacaatttgccaaccctgctgcacccaccacactgtcatcatcatgttgtccacaaaactca |
430 |
Q |
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| T |
27311809 |
tgaaaccagataaggcatgttatcaaaggatcgagctagacaatttgccaaccctgctgcacccaccacactgtcatcatcatgttgtccacaaaactca |
27311710 |
T |
|
| Q |
431 |
agtgcacggtgcttaagcgtctcaaacatgagctgcggctcgtgctgcatcactcggaggacatctgcacaagacggtccagctacagcatgtgtaactg |
530 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |
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| T |
27311709 |
agtgcacggtgcttaagcgtctcaaacatgagctgcggctcgtgctgcatcactcggaggacatctgcagaagacggtccagccacagcacgtgtaactg |
27311610 |
T |
|
| Q |
531 |
cgaaaccatgtggaccatcgctctgcaacaccctaacaacactagggccaccaaacaggttgtgcaacccaccaagtgcctcctcataagccccgcccaa |
630 |
Q |
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| T |
27311609 |
cgaaaccatgtggaccatcgctctgcaacaccctaacaacactagggccaccaaacaggttgtgcaacccaccaagtgcctcctcataagccccacccaa |
27311510 |
T |
|
| Q |
631 |
gaacattcccagatagtatcctccaccatgtccttccaattcatgcagtggcaagcttgactcaccaccaatgaacttgtcaatcttcccatcactgtca |
730 |
Q |
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| T |
27311509 |
gaacattcccagataatatcctccaccatgtccttccaattcatgcagtggcaagcttgactcaccaccaatgaacttgtcaatcttcccatcactgtca |
27311410 |
T |
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| Q |
731 |
caagtcaagtcagacaaaattcccctagcagttggttt |
768 |
Q |
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| T |
27311409 |
caagtcaagtcagacaaaattcccctagcagttggttt |
27311372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 27312132 - 27312052
Alignment:
| Q |
12 |
atgaacatgaacatgtcgaaattgcaaacaaaggcacataagaaccctgttctgcttcttcttgcatcctgtaactaaacc |
92 |
Q |
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| T |
27312132 |
atgaacatgaacatgtcgaaattgcaaacaaaggcacataagaaccctgttctgcttcttcttacatcctgtaactaaacc |
27312052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 570 - 685
Target Start/End: Complemental strand, 33048615 - 33048504
Alignment:
| Q |
570 |
cactagggccaccaaacaggttgtgcaacccaccaagtgcctcctcataagccccgcccaagaacattcccagatagtatc-----ctccaccatgtcct |
664 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
33048615 |
cactagggccaccaaacaagttgtgcaaaccaccaagtgcctcct---------cgcccaagaacaatcccatgtagtatcctccactccaccatgtcct |
33048525 |
T |
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| Q |
665 |
tccaattcatgcagtggcaag |
685 |
Q |
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| T |
33048524 |
tccaattcatgaagtgacaag |
33048504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 466
Target Start/End: Complemental strand, 33052207 - 33052137
Alignment:
| Q |
396 |
ccacactgtcatcatcatgttgtccacaaaactcaagtgcacggtgcttaagcgtctcaaacatgagctgc |
466 |
Q |
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||||||| ||||||||||| ||||||| |||||||||||||||||| ||||| ||| || |||| |||||| |
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| T |
33052207 |
ccacactatcatcatcatgctgtccacgaaactcaagtgcacggtgtttaagtgtcccacacatcagctgc |
33052137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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