View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12956_low_2 (Length: 731)
Name: NF12956_low_2
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12956_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 43226860 - 43226565
Alignment:
| Q |
12 |
atgaaacggccaatcatctttttcttcattgtcgagtgatttcaaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226860 |
atgaaacggccaatcatctttttcttcattgtcgagtgatttcgaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaa |
43226761 |
T |
|
| Q |
112 |
tttgtttattcatgctacttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226760 |
tttgtttattcatgctacttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttag |
43226661 |
T |
|
| Q |
212 |
aagatgagaaatgatcgaattttcaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
307 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226660 |
aagatgagaattgatcgcatatttaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
43226565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 400 - 579
Target Start/End: Complemental strand, 43226374 - 43226208
Alignment:
| Q |
400 |
ttttcctctgttttgcgcagagctgttattctctcaggaaacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgtttt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226374 |
ttttcctctgttttgcgcagagctgttattctctcataaaacactgttctt-------------aagaaaactatgagtgccatgttcggtctttgtttt |
43226288 |
T |
|
| Q |
500 |
gaataagcggggtagcttcttctccatcaaaagaggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43226287 |
gaataagcggggtagcttcttctccatcaaaagaggtaatttgagagttgttatatttttggtcaaaaccaaaggaatat |
43226208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 439 - 547
Target Start/End: Complemental strand, 43242116 - 43242008
Alignment:
| Q |
439 |
aacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgttttgaataagcggggtagcttcttctccatcaaaagaggtaa |
538 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||| || ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
43242116 |
aacattgttctttagaataagtaataagaaaattatggatgtcatgtccggtctttgttttgaataagcgggatagcttcttctgcatcaaaagaggtaa |
43242017 |
T |
|
| Q |
539 |
ttcgagagt |
547 |
Q |
| |
|
|| |||||| |
|
|
| T |
43242016 |
tttgagagt |
43242008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 43226124 - 43226065
Alignment:
| Q |
578 |
atccttacctttaaattagtggtttcataatttgatttagatacgaaacacttgtactag |
637 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43226124 |
atccttacctttaatttagtgctttcataatttgatttagatacgaaacacttttactag |
43226065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 43226505 - 43226458
Alignment:
| Q |
295 |
ttggagcttgagtggttggtttacagttgcggcatttggtggtggtgg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226505 |
ttggagcttgagtggttggtttacagttgcggcatttggtggtggtgg |
43226458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 15623144 - 15623223
Alignment:
| Q |
130 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
209 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |
|
|
| T |
15623144 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15623223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 15646933 - 15647012
Alignment:
| Q |
130 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
209 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |
|
|
| T |
15646933 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15647012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 16256768 - 16256842
Alignment:
| Q |
211 |
gaagatgagaaatgatcgaattttcaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgat |
285 |
Q |
| |
|
|||||||||||||||| | |||| ||| | || || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
16256768 |
gaagatgagaaatgatagggtttttaataacaaagtttgtggggttgatgaaatggtggatcaagtcaaggtgat |
16256842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 655107 - 655248
Alignment:
| Q |
48 |
tgatttcaaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtgaggt |
147 |
Q |
| |
|
||||||| |||||||||| | |||| |||| |||| ||||||||| ||||||||| | ||| || ||| ||||||| || ||||||| || ||||| |
|
|
| T |
655107 |
tgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttgggctagggaggt |
655206 |
T |
|
| Q |
148 |
gcggtctaaaaagcttagacgaggggcttggttaatttggca |
189 |
Q |
| |
|
|||| || |||||||| || ||||| |||||||||||||| |
|
|
| T |
655207 |
ttggtcaaagaagcttaggcgcggggcgtggttaatttggca |
655248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University