View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12956_low_3 (Length: 692)
Name: NF12956_low_3
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12956_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 288 - 674
Target Start/End: Complemental strand, 32811738 - 32811356
Alignment:
| Q |
288 |
atatattcttccctttcaacttgattgtttccatacacaagagttaagaatcaaatttatgaccacttacttaaatcacctaaattatttaccccttgca |
387 |
Q |
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| T |
32811738 |
atatattcttccctttcaaccggattgtttccatacgcaagagttaagaatcaaatttatgaccacttacttaaatcacctaaattatttaccccttgca |
32811639 |
T |
|
| Q |
388 |
ctgttgcacaaatgcgtgttcatataacgatcttaacactgcctctaaaatagtgaagaaaatttcacataccaatgagatttgctactttatccgtaca |
487 |
Q |
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| T |
32811638 |
ctgttgcacaaatgcttgttcatataacgatattaacactgcctctaaaatagtgaagaaaatttcacataccaatgagatttgctactttatccgtaca |
32811539 |
T |
|
| Q |
488 |
agcacatctttccttttgaatctaacaacgacagggcagcatgcttatc--atatagtatgtgtgttgcttaattggaggaccaaagagtagtagtagta |
585 |
Q |
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| T |
32811538 |
agcacatctttcc-tttggatctaacaacgacagggcagcatgcttatcatatatagtatgtgtgttgctta--gggaggaccaaag---agtagtagta |
32811445 |
T |
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| Q |
586 |
ttattcaatctcaatggttaaccttgaaaatccatcatgtcacgtttatcatattcaaatctcaatgcttaattgcttagcatagtatc |
674 |
Q |
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| T |
32811444 |
ttattcaatctcgctggttaaccttgaaaatccatcatgtcacgtttatcatattcaaatctcaatgcttaattgcttagcatagtatc |
32811356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 32812038 - 32811759
Alignment:
| Q |
14 |
atatccaataatatttaattttgtacgatttaagtttatttgcggttttagtttgataagtttgaatataaacacttctataaaaactatgttcattatt |
113 |
Q |
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| T |
32812038 |
atatccaataatatttaattttgtactattaaagtttatttgctgttttagtttgatcagtttgaatataaacactcctataaaaactatgttcattatt |
32811939 |
T |
|
| Q |
114 |
tcctcaaatgcatcatctctaactatcattttatcttttcttcatcacacgttgactcacttgaaaaacatatcatcnnnnnnnnnnnnnnnnattacca |
213 |
Q |
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| T |
32811938 |
tcctcaaatgcatcatctctaactatcattttatcttttcttcatcacacgttgactcacttgaaaaacctatcat------ttttttttattattacca |
32811845 |
T |
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| Q |
214 |
tgttattctcatgaagtttccaccgtcgtttatcgatgatcaatcttcattaaagaatctatgcggcacacaaaatatattcttcc |
299 |
Q |
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| T |
32811844 |
tgttatcctcatgaagtttccaccgtcgtttatcgatgaccaatcttcattaaagaatctatgcggcacacaaaatatattcttcc |
32811759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 3719253 - 3719192
Alignment:
| Q |
100 |
ctatgttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcac |
161 |
Q |
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|||| ||||||||||||| ||||||||||||| |||||| |||||| |||| ||||| |||| |
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| T |
3719253 |
ctattttcattatttcctaaaatgcatcatctgtaactagcattttttcttctcttcgtcac |
3719192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 27794250 - 27794307
Alignment:
| Q |
105 |
ttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcaca |
162 |
Q |
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|||||||||||| |||||||||||||||| ||||| ||| ||||| ||| ||||||| |
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| T |
27794250 |
ttcattatttccagaaatgcatcatctctagctatcttttcatcttctctccatcaca |
27794307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 27202480 - 27202416
Alignment:
| Q |
98 |
aactatgttcattatttcctcaaatgcatcatctctaactatcattttatcttttcttcatcaca |
162 |
Q |
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|||||| |||||||||||| |||||||||||| ||| ||| || |||||| | ||||||||||| |
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| T |
27202480 |
aactattttcattatttccataaatgcatcatccctatctagcaatttatcgtctcttcatcaca |
27202416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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