View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12956_low_8 (Length: 249)
Name: NF12956_low_8
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12956_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 45513992 - 45514209
Alignment:
| Q |
14 |
agagataggaagcagtgaaagggagtgctttgtttgggttgcgaagaactgtaacacctggccaatccactctaccatcagtgtttgaaccaggtccaac |
113 |
Q |
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| T |
45513992 |
agagataggaagcagtgaaagggagtgctttgtttgggttgcgaagaactgtaacacctggccaatccactctaccatcagtgtttgatccaggtccaac |
45514091 |
T |
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| Q |
114 |
attctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctctaggatcaaccattgaatctatgaaacaatgcaatata |
213 |
Q |
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| T |
45514092 |
attctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctcttggatcaaccattgaatctatgaaacaatgcaatata |
45514191 |
T |
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| Q |
214 |
gcaactgttgaatatgcc |
231 |
Q |
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|||||||||||||||||| |
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| T |
45514192 |
gcaactgttgaatatgcc |
45514209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 43699190 - 43699407
Alignment:
| Q |
14 |
agagataggaagcagtgaaagggagtgctttgtttgggttgcgaagaactgtaacacctggccaatccactctaccatcagtgtttgaaccaggtccaac |
113 |
Q |
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||||||| ||||||||||| |||||||||| || | |||||||| |||| ||||||| ||||||| |||||||||||||||||| || ||||||||||| |
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| T |
43699190 |
agagatatgaagcagtgaacgggagtgcttggtccgagttgcgaataactttaacaccaggccaattcactctaccatcagtgttagatccaggtccaac |
43699289 |
T |
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| Q |
114 |
attctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctctaggatcaaccattgaatctatgaaacaatgcaatata |
213 |
Q |
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| T |
43699290 |
attctcaaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatata |
43699389 |
T |
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| Q |
214 |
gcaactgttgaatatgcc |
231 |
Q |
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|| ||||| ||||||||| |
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| T |
43699390 |
gccactgtggaatatgcc |
43699407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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