View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_high_13 (Length: 351)
Name: NF12957_high_13
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 38 - 351
Target Start/End: Original strand, 19577342 - 19577655
Alignment:
| Q |
38 |
agaacctgtgtacgttttatttaattatttgacaaaaaattatgcctcaccgatattgagagttcagatacgcccttgggttcacttgacatgactgaat |
137 |
Q |
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| T |
19577342 |
agaacatgtgtacgttttatttaattatttgacaaaaaattatgcctcaccgatattgagagtccagatacgcccttgggttcacttgacatgaccgaat |
19577441 |
T |
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| Q |
138 |
caaaccagactagggttcccagcaaactggccggatcgttttttaaaatattgcatctaacttcaacgttcagcatatttaagttacaagttaaaataac |
237 |
Q |
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| T |
19577442 |
caaaccagactagggttcccggtaaactggccggatcgttttttaaaatattgcatctaacttcaacgttcaacatatttaagttacaagttaaaataac |
19577541 |
T |
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| Q |
238 |
aattggttaaccaactgctcaaaaaatttaaactgatacggatgtactttgcactatataaccaacattcaaatccatttcattgattcacaatcaccaa |
337 |
Q |
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| T |
19577542 |
aattggttaaccaactgctcaaaaaatttaaactgatacggatgtactttgcactatataaccaacattcaaatccatttcattgattcacaatcaccaa |
19577641 |
T |
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| Q |
338 |
tattgtatcacatc |
351 |
Q |
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| T |
19577642 |
tattgtatcacatc |
19577655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 30710653 - 30710605
Alignment:
| Q |
46 |
tgtacgttttatttaattatttgacaaaaaattatgcctcaccgatatt |
94 |
Q |
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| T |
30710653 |
tgtacgttttatttaattatttgacaagaaattatgcctcaccgatatt |
30710605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 8064369 - 8064304
Alignment:
| Q |
51 |
gttttatttaattatttgacaaaaaa-ttatgcctcaccgatattgagagttcagatacgcccttg |
115 |
Q |
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| T |
8064369 |
gttttatttaattatttgacaaaaaatttgtgcctcatcgatattttgagtccagatccgcccttg |
8064304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 17304349 - 17304305
Alignment:
| Q |
51 |
gttttatttaattatttgacaaaaa-attatgcctcaccgatatt |
94 |
Q |
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| T |
17304349 |
gttttatttaattatttgacaaaaacattgtgcctcaccgatatt |
17304305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 7138280 - 7138208
Alignment:
| Q |
44 |
tgtgtacgttttatttaattatttgac----aaaaaattatgcctcaccgatattgagagttcagatacgccc |
112 |
Q |
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| T |
7138280 |
tgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctcaccaatattttgagttcagatccgccc |
7138208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 5090673 - 5090615
Alignment:
| Q |
48 |
tacgttttatttaattatttgacaaaaaattatgcctcaccgatattgagagttcagat |
106 |
Q |
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| T |
5090673 |
tacgttttatttgattatttgacataaaattgtgcctcaccaatattgtgagtccagat |
5090615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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