View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_high_15 (Length: 239)
Name: NF12957_high_15
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 40328638 - 40328543
Alignment:
| Q |
19 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgattaata |
114 |
Q |
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| T |
40328638 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgatgaata |
40328543 |
T |
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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 19265876 - 19265786
Alignment:
| Q |
19 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgat |
109 |
Q |
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| T |
19265876 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgat |
19265786 |
T |
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Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 35134906 - 35134996
Alignment:
| Q |
19 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgat |
109 |
Q |
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| T |
35134906 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgat |
35134996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 3778735 - 3778830
Alignment:
| Q |
19 |
tgggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgattaata |
114 |
Q |
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| T |
3778735 |
tgggaaacccaagtattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgatgaata |
3778830 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 5469529 - 5469604
Alignment:
| Q |
110 |
taataattctttcaagtgaataaattaaaccatccataatcattaatctagctaattgaatttcacactgaaattc |
185 |
Q |
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| T |
5469529 |
taattattctttcaagtgaataaattaaagcatccataatcattaatctagctaattgaatttcacaccgaaattc |
5469604 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 7817594 - 7817498
Alignment:
| Q |
20 |
gggaaacccaaatattttccaagagaaggtgtgctttgaataccagagatgtttgtgagattagtgattttcccatgaggagtacctgattaataat |
116 |
Q |
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| T |
7817594 |
gggaagcccaagtattttccaagagaatgtgtgctttggattccagagatggcggtgagattagtgatttttccatggggtgtacctgatgaataat |
7817498 |
T |
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