View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12957_high_2 (Length: 726)
Name: NF12957_high_2
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 16 - 709
Target Start/End: Original strand, 26130238 - 26130931
Alignment:
| Q |
16 |
atggatagatacagaacatgcacaaataccagacatattaataatatcaatcaagtataattaaaaaatactaagcctccaattacagatattaaacatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26130238 |
atggatagatacagaacatgcacaaataccagacatattaataatatcaatcaagtataattaaaaaatactaagcctccaattacagatattaaacatt |
26130337 |
T |
|
| Q |
116 |
cacttacataatcattctcagagttgtacgaatcctcgtgttcttgaatttcatcttcagttgtcattggagattgtgtctgcccaacattgatgtgact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26130338 |
cacttacataatcattctcagagttgtacgaatcctcgtgttcctgaatttcatcttcagttgaaattggagattgtgtctgcccaacattgatgtgact |
26130437 |
T |
|
| Q |
216 |
gatgcaagcaaacttggaccaccttggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagctagaatatgatgacatggcaat |
315 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26130438 |
gatgcaagcaaacttggaccacctaggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagatagaatatgatgacatggcaat |
26130537 |
T |
|
| Q |
316 |
ccaattgattccattctaaaacatgagcatttcagatcaattggttcttgacagtatgctacacgccaaacactaccatccccacaatatgttgaaactg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
26130538 |
ccaattgattccattctaaaacatgagcatttcagatcaattggttcttgacagcatgctacacgccaaacactaccatcaccacaatattttgaaactg |
26130637 |
T |
|
| Q |
416 |
tgaaaatataccacgtagacatttcgtggcattctgtaattttaagaagcattgatcttttcataatagaccgaaacatgacaaatatctcctttgtgaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26130638 |
tgaaaatataccacgtagacatttcgtggcattctgtcattttaagaagcattgatcttttcataatagaccgaaacatgacaaatatctcctttgtgaa |
26130737 |
T |
|
| Q |
516 |
ctgaatttctgccgatttctccagtgatcgcaaactagtctgcatcattggttgaccatattttgataggaaatcagatttaatttccctaaaccgaaaa |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26130738 |
ctgaatttctgccgatttctccagtgatcgcaaactagtttgcatcattggttgaccatattttgataggaaatcagatttaatttccctaaaccgaaaa |
26130837 |
T |
|
| Q |
616 |
tatgtaagacatttatgaaattgttgaacaaaatcagtcatatttatccgagaatgcacataatgtttgatgtggctatggagtgcctcacaac |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26130838 |
tatgtaagacatttatgaaattgttgaacaaaatcagtcatatttatccgagaatgcacatattgtttgatgtggctatggagtgcctcacaac |
26130931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 221 - 709
Target Start/End: Complemental strand, 11011150 - 11010663
Alignment:
| Q |
221 |
aagcaaacttggaccaccttggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagctagaatatgatgacatggcaatccaat |
320 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||| || ||| | |||||||||| ||| |||| |||| |
|
|
| T |
11011150 |
aagcaaacttggaccacctttgcaaaaccaaacattttggaagatcatcaaaatcaagatacagaagaacaacaagaatatgatcacacagcaaaccaag |
11011051 |
T |
|
| Q |
321 |
tgattccattctaaaacatgagcatttcagatcaattggttcttgacagtatgctacacgccaaacactaccatccccacaatatgttgaaactgtgaaa |
420 |
Q |
| |
|
||||||||||||| ||| |||||||| | | ||| |||||||| ||| |||| ||| ||||||| |||||||| |||| ||| |||||| |||||| |
|
|
| T |
11011050 |
cgattccattctaagacacgagcattttaaaacaactggttcttcacaatatgtcacatgccaaaccctaccatcaccacggtattttgaaatcgtgaaa |
11010951 |
T |
|
| Q |
421 |
atataccacgtagacatttcgtggcattctgtaattttaagaagcattgatcttttcataatagaccgaaacatgacaaatatctcctttgtgaactgaa |
520 |
Q |
| |
|
||||||| | | || ||||| |||| |||||||| | ||||||||| ||||||||||| | | |||||||| | ||| ||| |||| || |||||| |
|
|
| T |
11010950 |
atataccccatggaaatttcttggctttctgtaactctaagaagcaatgatcttttcagcacggtacgaaacataagaaaaatcgccttcgtaaactgat |
11010851 |
T |
|
| Q |
521 |
tttctgccgatttctccagtgatcgcaaactagtctgcatcattggttgaccatattttgataggaaatcagatttaatttccctaaaccgaaaatatgt |
620 |
Q |
| |
|
| | | |||||||| | ||| || ||||| |||||||||| || ||||||| || ||| || |||||||| ||||||||| |||| |||| |||| |
|
|
| T |
11010850 |
tagccacagatttctctaatgaacgtaaactggtctgcatcacaggcagaccataattggattggtaatcagataaaatttccctgaacc-aaaaaatgt |
11010752 |
T |
|
| Q |
621 |
aagacatttatgaaattgttgaacaaaatcagtcatatttatccgagaatgcacataatgtttgatgtggctatggagtgcctcacaac |
709 |
Q |
| |
|
| ||| |||| || ||||| |||||| ||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
11010751 |
taaacacctatggaactgttgcacaaaaccagtcatgtttatccgagaatgcacgtattgtcccatgtggctatggagtgcctcacaac |
11010663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 566 - 709
Target Start/End: Complemental strand, 21428577 - 21428434
Alignment:
| Q |
566 |
gttgaccatattttgataggaaatcagatttaatttccctaaaccgaaaatatgtaagacatttatgaaattgttgaacaaaatcagtcatatttatccg |
665 |
Q |
| |
|
|||||||||| || || |||||||||||| ||||| ||||||||||||||| |||||||| |||| |||||||||||||| |||| ||| | || || |
|
|
| T |
21428577 |
gttgaccatagttggaatggaaatcagattcaattttcctaaaccgaaaataggtaagacacctatggaattgttgaacaaagtcagccatgctaatacg |
21428478 |
T |
|
| Q |
666 |
agaatgcacataatgtttgatgtggctatggagtgcctcacaac |
709 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
21428477 |
agaatgcacaaaatgtcccatgtggctatggagcgcctcacaac |
21428434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University