View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12957_high_8 (Length: 436)
Name: NF12957_high_8
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_high_8 |
 | |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 1906288 - 1905852
Alignment:
| Q |
1 |
ataacagtaccaaaaatttcaaaaacatgagacacactaaaagaccgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccc |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
1906288 |
ataacagtaccaaaaaattccaaaacatgagacacactaaaagaccgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatacgtccc |
1906189 |
T |
|
| Q |
101 |
tgactttatgaatatttcaaaaaagtctc-gactctgtcaaatttactcgcattagtccttcaaagaatatgctaaggactatatagttagtaagcggat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1906188 |
tgactttatgaatatttcaaaaaagtctctgactctgtcaaatttactcacattagtccttcaaagaatatgctaaggactacatagttagtaagcggat |
1906089 |
T |
|
| Q |
200 |
aaacttaagggccaaattgacaataagttgttaaaatataaggacttaatcgatattaagtggctgagcgtagggaccaacttaatagtttaatagagtc |
299 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
1906088 |
aaacttaaggatcaaattgacagtaagttgttaaaatataaggacttaatcgatattaagtggttgagtgtagggaccaacttaatagtttaatagagtc |
1905989 |
T |
|
| Q |
300 |
atggactttttcgaaatactcgtaatctcaaggacctatttgagagtatcctacaaaagactaatttgatggttaactcctaaaaggccttgacagtcaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
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|
| T |
1905988 |
atggactttttcgaaatactcgtaatctcaaggacctatttgagagtatcctacaaaagactaatctgatagttaactcctaaaaggccctgacagtcaa |
1905889 |
T |
|
| Q |
400 |
atcaaatattgtaataaagtacaaggccctttttgcc |
436 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
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|
| T |
1905888 |
atcaaatattgtaataaagtacaaggccatttttgcc |
1905852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 46 - 434
Target Start/End: Complemental strand, 1896385 - 1895999
Alignment:
| Q |
46 |
cgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaagtctc--gactctgtcaaatt |
143 |
Q |
| |
|
|||||||||| |||| |||| | |||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
1896385 |
cgagtaaaccttcaagttagaccttgattttataggtcgctttcaaatacatctttgactttatgaatatttcaaaaaagtctctcgactctgttaaatt |
1896286 |
T |
|
| Q |
144 |
tactcgcattagtccttcaaagaatatgctaaggactatatagttagtaagcggataaacttaagggccaaattgacaataagttgttaaaatataagga |
243 |
Q |
| |
|
||||| |||| ||||| |||||||||| || |||||| || |||||||| |||||||||||| | ||||||||| | ||||| |||||||||| | | |
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|
| T |
1896285 |
tactcatattaatcctttaaagaatatgttagggactaaattgttagtaatcggataaacttagagaccaaattgatagtaagtagttaaaatattggca |
1896186 |
T |
|
| Q |
244 |
cttaatcgatattaagtggctgagcgtagggaccaacttaatagtttaatagagtcatggactttttcgaaatactcgt-aatctcaaggacctatttga |
342 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
1896185 |
cttaatcgatattaagtggtagagtatagagaccaacttaatagtttaatagagtcagagactttttcgaaatactcgtaaatctcaaggacctatttaa |
1896086 |
T |
|
| Q |
343 |
gagtatcctacaaa-agactaatttgatggttaactcctaaaaggccttgacagtcaaatcaaatattgtaataaagtacaaggccctttttg |
434 |
Q |
| |
|
| ||| || |||| |||||||| |||| ||||||| || || | || |||||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
1896085 |
taatat-ctccaaagagactaatgtgatagttaactttta-----ccctaactgtcaaatcaaatattgtagtaaagtataaggccatttttg |
1895999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 2046823 - 2046904
Alignment:
| Q |
275 |
accaacttaatagtttaatagagtcatggactttttcgaaatactcgtaatctcaaggacctatttgagagtatcctacaaa |
356 |
Q |
| |
|
|||||||| | |||||| |||||||| ||| ||| |||||||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2046823 |
accaacttgacagtttattagagtcaaagaccgttttaaaatactcataatctcagggacctatttgagagcgtcctacaaa |
2046904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 8109289 - 8109376
Alignment:
| Q |
74 |
tttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaa-gtctcgactctgtcaaatttactcgcattagtccttc |
161 |
Q |
| |
|
|||||||| |||| ||||| | | |||||| ||||||||||||||||||| |||| | |||| |||||||||||| ||||||||||| |
|
|
| T |
8109289 |
tttgtagggcgctatcaaacaggtccctgatattatgaatatttcaaaaaatgtct-gtctctatcaaatttactcatattagtccttc |
8109376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 23439310 - 23439482
Alignment:
| Q |
84 |
gctctcaaatatgcccctgactttatgaatatttca--aaaaagtc-tcgactctgtcaaatttactcgcattagtccttcaaagaatatgctaaggact |
180 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||| ||| | |||| || |||||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
23439310 |
gctctcaaataggtccctgactttatgaatatttttttaaaaggtcgttgactttgacaaatttaatt-cattagtccttcaaagaatatgctagggact |
23439408 |
T |
|
| Q |
181 |
atatagttagtaagcggataaacttaagggccaaattgacaataagttgttaaaatataaggacttaatcgata |
254 |
Q |
| |
|
| || | ||||||| ||||||||||| |||||||||| | | | | ||||||||||||| ||||||||| |||| |
|
|
| T |
23439409 |
acattgatagtaagtggataaacttaggggccaaattaatattgatttgttaaaatatagggacttaattgata |
23439482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 40304403 - 40304342
Alignment:
| Q |
284 |
atagtttaatagagtcatggactttttcgaaatactcgtaatctcaaggacctatttgagag |
345 |
Q |
| |
|
||||||||||||||| | |||| |||| ||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
40304403 |
atagtttaatagagttagggacctttttgaaatactcataatcgcaaggacctattcgagag |
40304342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 26393004 - 26392917
Alignment:
| Q |
270 |
tagggaccaacttaatagtttaatagagtcatggactttttcgaaatactcgtaatctcaaggac-ctatttgagagtatcctacaaa |
356 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||| |||| |||||| | |||||||||| || ||||||||| ||||||||||| |
|
|
| T |
26393004 |
tagggaccaacttgacagtttaatagagtcgaggacctttttaaaatacccataatctcaagaactttatttgagattatcctacaaa |
26392917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 340
Target Start/End: Complemental strand, 683659 - 683371
Alignment:
| Q |
53 |
accatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaagt-ctcgactctgtcaaatttac-tcgc |
150 |
Q |
| |
|
|||| |||||||||| ||| |||||||| |||||||||||| | ||||| || ||||||||||||||| || || || | |||||| ||| | || |
|
|
| T |
683659 |
accaccaaattagtccctgactttgtagggcgctctcaaataggtttctgacgttctgaatatttcaaaaaggttcttgattttgtcaatttttcctcat |
683560 |
T |
|
| Q |
151 |
attagtccttcaaagaatatgctaaggactatatagttagtaagcggataaacttaagggccaaattgacaataagttgttaaaatataaggacttaatc |
250 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || | ||||| | ||| ||||||| || |||||||| | ||| || |||||||||||||||||||| |
|
|
| T |
683559 |
attagtccttcaatgaatatgctagggactacattgatagtaggtgga-aaacttagggatcaaattgatagtaaattattaaaatataaggacttaatt |
683461 |
T |
|
| Q |
251 |
gatattaagtggctgagcgtagggaccaacttaatagtttaatagagtcatggactttttcgaaatactcgtaatctcaaggacctattt |
340 |
Q |
| |
|
|||| ||||||| | | || ||| |||||| | | ||||||||||||| ||| |||| |||||| || |||| ||| |||||||||| |
|
|
| T |
683460 |
gataataagtggttaaatataaggatcaacttgacaatttaatagagtcagagacctttttgaaatagtcataatttcagggacctattt |
683371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 16411973 - 16412044
Alignment:
| Q |
273 |
ggaccaacttaatagtttaatagagtcatggactttttcgaaatactcgtaatctcaaggacctatttgaga |
344 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| |||| ||||||||| |||||||| | |||||||||||| |
|
|
| T |
16411973 |
ggaccaacctaatagtttaacacagtcatggatctttttgaaatactcataatctcaggaacctatttgaga |
16412044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 8787360 - 8787560
Alignment:
| Q |
47 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaagtctc-gactctgtcaaattt- |
144 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| ||| ||||||| | |||| ||||||||||||||| ||| ||| | |||| ||| |||||| |
|
|
| T |
8787360 |
gagtaaaccaccaaattagtccgcgactttgtaggatgctgtcaaataggtaactgattttatgaatatttcagaaaggtccctgactttgttaaatttt |
8787459 |
T |
|
| Q |
145 |
actcgcattagtccttcaaagaatatgctaaggactatatagttagtaagcggataaacttaagggccaaattgacaataagttgttaaaatataaggac |
244 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||| || | ||||| | ||||||||||| || ||||||||| | | | ||||||||||||| |||| |
|
|
| T |
8787460 |
actat-attagttcttcaaagaatatgctaaggactaaatcgatagtacgtggataaacttagggaccaaattgatagttacttgttaaaatatagggac |
8787558 |
T |
|
| Q |
245 |
tt |
246 |
Q |
| |
|
|| |
|
|
| T |
8787559 |
tt |
8787560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 14748416 - 14748336
Alignment:
| Q |
43 |
gaccgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaa |
123 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| ||| | |||| ||||| | || ||||||||||||||||||||||| |
|
|
| T |
14748416 |
gaccgagtaaaccaccaaattagtccttgacattgcaggacactcttaaataggtccttgactttatgaatatttcaaaaa |
14748336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 53797383 - 53797307
Alignment:
| Q |
47 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaa |
123 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| || |||||||||| | | ||||||||||||||||| ||||| |
|
|
| T |
53797383 |
gagtaaactatcaaattaatctttgattttgtagttcactctcaaataggtcattgactttatgaatattttaaaaa |
53797307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 346
Target Start/End: Complemental strand, 15633813 - 15633655
Alignment:
| Q |
188 |
tagtaagcggataaacttaagggccaaattgacaataagttgttaaaatataaggacttaatcgatattaagtggctgagcgtagggaccaacttaatag |
287 |
Q |
| |
|
||||||| ||||||||||| || |||||||| | |||||||||||||||||| || ||||| |||| ||||| | | |||||| |||||| |||| |
|
|
| T |
15633813 |
tagtaagtggataaacttatggatcaaattgatattaagttgttaaaatataaagatttaattgatagtaagtaattaaatatagggatcaacttgatag |
15633714 |
T |
|
| Q |
288 |
tttaatagagtcatggactttttcgaaatactcgtaatctcaaggacctatttgagagt |
346 |
Q |
| |
|
|| |||||||||| | || || | ||||| | | ||||||||| ||| ||||||||||| |
|
|
| T |
15633713 |
ttgaatagagtcaagtaccttattgaaatgcacataatctcaaagacttatttgagagt |
15633655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 28117565 - 28117730
Alignment:
| Q |
98 |
ccctgactttatgaatatttcaaaaaagtctc-gactctgtcaaa-tttactcgcattagtccttcaaagaatatgctaaggactatatagttagtaagc |
195 |
Q |
| |
|
|||| ||||||||||||||||||||| || || || | | ||||| ||||||| |||||| ||||||||||||||||| |||| || | ||||||| |
|
|
| T |
28117565 |
ccctaactttatgaatatttcaaaaaggtttctgattttatcaaattttactcatattagt-cttcaaagaatatgctagatactaaattgatagtaagt |
28117663 |
T |
|
| Q |
196 |
ggataaacttaagggccaaattgacaataagttgttaaaatataaggacttaatcgatattaagtgg |
262 |
Q |
| |
|
||||| | || || ||||||||| | ||| || |||||||||||||||||| | |||| ||||||| |
|
|
| T |
28117664 |
tgataagcctatggaccaaattgatagtaatttattaaaatataaggacttagttgatagtaagtgg |
28117730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 352
Target Start/End: Original strand, 35861669 - 35861797
Alignment:
| Q |
223 |
taagttgttaaaatataaggacttaatcgatattaagtggctgagcgtagggaccaacttaatagtttaatagagtcatggactttttcgaaatactcgt |
322 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| | ||||| ||| || | |||||||| | ||||||||||||| |||| |||| ||||||||| | |
|
|
| T |
35861669 |
taagttgttaaaatata-ggacttaattgatagtgagtggttgaatatatgaaccaacttgccactttaatagagtcaaggacctttttgaaatactcat |
35861767 |
T |
|
| Q |
323 |
aatctcaaggacctatttgagagtatccta |
352 |
Q |
| |
|
|| ||| |||||||| ||||||| ||||| |
|
|
| T |
35861768 |
tatttcagggacctatctgagagtgtccta |
35861797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 10028976 - 10028902
Alignment:
| Q |
47 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaa |
121 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||| ||||||||| | | ||||||||| ||||||||||| |
|
|
| T |
10028976 |
gagtagaccaccaaattagtctttgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaa |
10028902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 15128634 - 15128550
Alignment:
| Q |
151 |
attagtccttcaaagaatatgctaaggactatatagttagtaagcggataaacttaagggccaaattgacaataagttgttaaaa |
235 |
Q |
| |
|
|||| |||||||||||||||| | |||||| || | ||| ||| ||| ||||||| || |||||| |||| ||||||||||||| |
|
|
| T |
15128634 |
attaatccttcaaagaatatgacatggactaaattgatagcaagtggaaaaacttatggaccaaatggacagtaagttgttaaaa |
15128550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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