View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_low_1 (Length: 825)
Name: NF12957_low_1
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 24401130 - 24400720
Alignment:
| Q |
11 |
cagagaccggtgagactgagaatacaaacaaactcatttttattgttatcaggatatttaccaacttatgcttatttgctaaagtgcccttagttgctgg |
110 |
Q |
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| T |
24401130 |
cagagaccggtgagactgagaatacaaacaaactcatttttattgttatcag-atatttaccaacttatgcttatttgctaaagtgcccttagttgctgg |
24401032 |
T |
|
| Q |
111 |
ttgttgatcacgtttattttacacacatgccataaggaaccaacaaccactcacactacccttcctttgtttttcaacaaaacactcacttaccaatata |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24401031 |
ttgttgatcacgtttattttacacacatgccataaggaaccaacaaccacttacactacccttcctttgtttttcaacaaatcactcacttaccaatata |
24400932 |
T |
|
| Q |
211 |
tatataataattgctagtaacacaagatggtacacacatatacatactctctcatttgcatttttctgcaatcctttcctctcctccaaatacacttgag |
310 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24400931 |
tatataataattgctagtaacacaagacggtacaaacatatacatactctctcatttgcatttttctgcaatccttttctctcctccaaatacac-tgag |
24400833 |
T |
|
| Q |
311 |
tt-ctaggtttatg-ttcatgtgttcattcagattcaagctgttttgtcatctgtggtatgattcataccggaaaagaacatgtacgttaaacattggag |
408 |
Q |
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|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24400832 |
ttcctaggtttatgtttcctgtgttcattcagattcaagctgttttgtcatctgtggtatgattcataccggaaaagaacatgtacgtcaaacattggag |
24400733 |
T |
|
| Q |
409 |
attttgtgtttat |
421 |
Q |
| |
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|||||||||||| |
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| T |
24400732 |
gttttgtgtttat |
24400720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 607 - 803
Target Start/End: Complemental strand, 24400640 - 24400436
Alignment:
| Q |
607 |
atgcttatactttcatgaattagtatagaaagataagatgtatatatata--------catacctccatttggtcaccaatgtgaatgacaagggcatta |
698 |
Q |
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| T |
24400640 |
atgcttatattttcatgaattagtatagaaagataagatgtatatatatatatatatacatacctccatttggtcaccaatgtgaatgacaagggcatta |
24400541 |
T |
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| Q |
699 |
gggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgcacttcattagggaccaaaatggtaagaaaagacatatctgtatgtg |
798 |
Q |
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| T |
24400540 |
gggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgcacttcattagggaccaaaatggtaagaaaagacatatctgtgtgtg |
24400441 |
T |
|
| Q |
799 |
gaggc |
803 |
Q |
| |
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||||| |
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| T |
24400440 |
gaggc |
24400436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 652 - 760
Target Start/End: Complemental strand, 24407401 - 24407293
Alignment:
| Q |
652 |
atatacatacctccatttggtcaccaatgtgaatgacaagggcattagggacatacttaacatcataccattgaccatctctagaggcttgaaggccctg |
751 |
Q |
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|||||||||||| |||||||||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24407401 |
atatacatacctgcatttggtcaccaacgtgaataatgagggcattggggacatacttaacatcataccattgaccatctctagaggcttgaagaccctc |
24407302 |
T |
|
| Q |
752 |
cacttcatt |
760 |
Q |
| |
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||||||||| |
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| T |
24407301 |
cacttcatt |
24407293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 550 - 615
Target Start/End: Complemental strand, 24400723 - 24400658
Alignment:
| Q |
550 |
ttatacaacaatatcaaatacatctctctcatatttattctcattaacattcaattgatgcttata |
615 |
Q |
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| T |
24400723 |
ttatacaacaatatcaaggacatctctctcatatttattctcattaacattcaattgatgcttata |
24400658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 653 - 766
Target Start/End: Complemental strand, 32770487 - 32770374
Alignment:
| Q |
653 |
tatacatacctccatttggtcaccaatgtgaatgacaagggcattagggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgc |
752 |
Q |
| |
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|||| ||||||||| |||||| ||||||||||| |||| || ||||||||||||||||| |||||||| |||||||||||||||||||| || || |
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| T |
32770487 |
tatatatacctccagttggtcgccaatgtgaattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccttga |
32770388 |
T |
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| Q |
753 |
acttcattagggac |
766 |
Q |
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| T |
32770387 |
acatcatttgggac |
32770374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 534
Target Start/End: Original strand, 2353311 - 2353382
Alignment:
| Q |
463 |
aggttatatatcggtttattattttgcaggtttcatacgaattgtcaacggaagatgttgatagagttgtat |
534 |
Q |
| |
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| T |
2353311 |
aggttatataacggtttattattttgcaggttacatatgagttgttggtggagaatgttgatagagttgtat |
2353382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 8388451 - 8388379
Alignment:
| Q |
463 |
aggttatatatcggtttattattttgcaggtttcatacgaattgtcaacggaagatgttgatagagttgtatc |
535 |
Q |
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|||||||||| ||||||||||||||||| ||| ||| || |||| || |||||||||||||||||||||||| |
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| T |
8388451 |
aggttatataacggtttattattttgcaagttatatatgagttgttaatggaagatgttgatagagttgtatc |
8388379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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