View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12957_low_11 (Length: 412)

Name: NF12957_low_11
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12957_low_11
NF12957_low_11
[»] chr5 (32 HSPs)
chr5 (1-399)||(40266282-40266691)
chr5 (235-311)||(40266591-40266667)
chr5 (25-101)||(40266370-40266446)
chr5 (41-136)||(22252221-22252316)
chr5 (24-107)||(25759839-25759921)
chr5 (246-296)||(22252267-22252317)
chr5 (93-156)||(1145805-1145868)
chr5 (95-156)||(7164265-7164326)
chr5 (199-248)||(7826053-7826102)
chr5 (24-105)||(25787840-25787920)
chr5 (83-135)||(15798867-15798919)
chr5 (199-259)||(42690471-42690531)
chr5 (93-156)||(17644529-17644592)
chr5 (211-280)||(1145855-1145924)
chr5 (86-135)||(16879822-16879871)
chr5 (94-135)||(17344802-17344843)
chr5 (238-294)||(6636908-6636964)
chr5 (235-311)||(25759840-25759915)
chr5 (312-348)||(40266761-40266797)
chr5 (118-189)||(25994909-25994980)
chr5 (74-133)||(36317824-36317883)
chr5 (37-103)||(18673609-18673675)
chr5 (230-280)||(25787839-25787889)
chr5 (211-280)||(7164207-7164276)
chr5 (251-280)||(33037400-33037429)
chr5 (252-280)||(1145171-1145199)
chr5 (158-186)||(7826073-7826101)
chr5 (132-184)||(15798860-15798911)
chr5 (25-105)||(25760512-25760591)
chr5 (90-157)||(26092589-26092657)
chr5 (88-136)||(40266556-40266604)
chr5 (129-189)||(42690499-42690559)
[»] chr1 (23 HSPs)
chr1 (44-311)||(5602944-5603221)
chr1 (24-101)||(5602943-5603019)
chr1 (199-267)||(10884387-10884455)
chr1 (23-136)||(10884457-10884569)
chr1 (121-184)||(42497872-42497934)
chr1 (38-87)||(33617656-33617705)
chr1 (93-137)||(2094310-2094354)
chr1 (141-186)||(10884426-10884471)
chr1 (85-134)||(13280745-13280794)
chr1 (69-101)||(10884387-10884419)
chr1 (77-136)||(5270093-5270152)
chr1 (89-154)||(32713222-32713288)
chr1 (86-135)||(32713238-32713288)
chr1 (43-85)||(33401425-33401467)
chr1 (37-87)||(37260930-37260980)
chr1 (51-121)||(42497832-42497902)
chr1 (94-136)||(42883722-42883764)
chr1 (25-106)||(3792296-3792376)
chr1 (38-87)||(28446547-28446596)
chr1 (150-183)||(47543014-47543047)
chr1 (251-295)||(28446549-28446593)
chr1 (120-184)||(32713222-32713286)
chr1 (251-295)||(33617659-33617703)
[»] chr8 (23 HSPs)
chr8 (37-313)||(3588338-3588612)
chr8 (235-312)||(3588548-3588624)
chr8 (84-154)||(26149959-26150029)
chr8 (51-167)||(27235457-27235573)
chr8 (25-136)||(1349187-1349297)
chr8 (37-107)||(1349058-1349128)
chr8 (84-156)||(17875312-17875384)
chr8 (141-184)||(150899-150942)
chr8 (51-138)||(14998883-14998970)
chr8 (77-155)||(150928-151006)
chr8 (198-260)||(27235311-27235373)
chr8 (77-157)||(427975-428055)
chr8 (25-101)||(3588340-3588415)
chr8 (251-314)||(5967256-5967318)
chr8 (119-189)||(150928-150997)
chr8 (25-87)||(5967254-5967315)
chr8 (122-184)||(15892151-15892213)
chr8 (118-184)||(17875312-17875377)
chr8 (24-136)||(9448344-9448456)
chr8 (86-155)||(32035808-32035877)
chr8 (141-189)||(27235340-27235388)
chr8 (89-137)||(27855854-27855902)
chr8 (106-138)||(36916132-36916164)
[»] chr7 (31 HSPs)
chr7 (25-155)||(28139384-28139513)
chr7 (25-107)||(28138759-28138840)
chr7 (235-312)||(28139438-28139514)
chr7 (69-124)||(5728182-5728237)
chr7 (91-155)||(149038-149102)
chr7 (235-314)||(28138756-28138834)
chr7 (84-142)||(16984381-16984439)
chr7 (69-136)||(2847213-2847281)
chr7 (73-155)||(18146169-18146251)
chr7 (69-134)||(24857139-24857204)
chr7 (87-155)||(15819770-15819838)
chr7 (214-285)||(23345028-23345099)
chr7 (73-135)||(11823725-11823787)
chr7 (38-87)||(5189-5238)
chr7 (251-295)||(5191-5235)
chr7 (120-184)||(12082294-12082358)
chr7 (23-75)||(33839471-33839522)
chr7 (37-97)||(34116030-34116090)
chr7 (239-295)||(34116034-34116090)
chr7 (87-134)||(19931954-19932001)
chr7 (75-113)||(2377205-2377243)
chr7 (237-311)||(10526989-10527062)
chr7 (69-133)||(31853243-31853306)
chr7 (152-192)||(8460207-8460247)
chr7 (83-154)||(12082286-12082358)
chr7 (120-184)||(19931934-19931997)
chr7 (86-130)||(23345001-23345045)
chr7 (338-390)||(25000492-25000544)
chr7 (25-81)||(26009369-26009424)
chr7 (255-311)||(26009369-26009424)
chr7 (23-103)||(41957567-41957646)
[»] chr2 (23 HSPs)
chr2 (25-137)||(12965049-12965160)
chr2 (24-98)||(25389856-25389929)
chr2 (238-311)||(22787991-22788063)
chr2 (211-313)||(28360161-28360262)
chr2 (25-98)||(22787991-22788063)
chr2 (238-311)||(25389856-25389928)
chr2 (25-101)||(28360185-28360260)
chr2 (90-180)||(41101211-41101301)
chr2 (101-180)||(8241818-8241897)
chr2 (25-105)||(19984702-19984781)
chr2 (24-132)||(28360025-28360131)
chr2 (24-99)||(22727661-22727735)
chr2 (77-136)||(25770354-25770413)
chr2 (25-87)||(8273245-8273306)
chr2 (120-184)||(41101212-41101275)
chr2 (236-293)||(494969-495025)
chr2 (84-137)||(18877892-18877945)
chr2 (43-107)||(494962-495025)
chr2 (251-295)||(8273260-8273304)
chr2 (230-272)||(19984701-19984743)
chr2 (237-295)||(22727677-22727735)
chr2 (54-107)||(20686799-20686852)
chr2 (88-139)||(24929094-24929146)
[»] chr3 (16 HSPs)
chr3 (86-155)||(2652420-2652489)
chr3 (37-134)||(8150180-8150277)
chr3 (251-316)||(53814580-53814644)
chr3 (199-314)||(50663872-50663986)
chr3 (25-87)||(53814578-53814639)
chr3 (87-136)||(3540182-3540231)
chr3 (77-114)||(45003203-45003240)
chr3 (75-107)||(8150304-8150336)
chr3 (91-151)||(54528890-54528950)
chr3 (54-104)||(7825992-7826042)
chr3 (25-87)||(15040681-15040742)
chr3 (119-184)||(2652425-2652489)
chr3 (251-312)||(15040680-15040740)
chr3 (41-85)||(7665748-7665792)
chr3 (251-295)||(7665748-7665792)
chr3 (40-100)||(30533234-30533294)
[»] chr6 (20 HSPs)
chr6 (89-184)||(10378778-10378873)
chr6 (94-285)||(26498207-26498381)
chr6 (79-181)||(10378783-10378885)
chr6 (102-158)||(807129-807185)
chr6 (83-135)||(18744727-18744779)
chr6 (69-135)||(28050653-28050719)
chr6 (255-316)||(14153349-14153409)
chr6 (37-137)||(2559586-2559686)
chr6 (69-129)||(14469187-14469247)
chr6 (25-107)||(806545-806626)
chr6 (25-87)||(14153354-14153415)
chr6 (145-187)||(24359109-24359151)
chr6 (77-135)||(24359142-24359199)
chr6 (51-101)||(26498207-26498257)
chr6 (141-182)||(14028160-14028201)
chr6 (251-296)||(32274198-32274243)
chr6 (75-107)||(7918811-7918843)
chr6 (88-131)||(11181518-11181562)
chr6 (81-113)||(14486118-14486150)
chr6 (24-100)||(31522539-31522614)
[»] chr4 (21 HSPs)
chr4 (87-184)||(17115815-17115912)
chr4 (87-153)||(38653893-38653959)
chr4 (251-294)||(24974165-24974208)
chr4 (87-138)||(43148614-43148665)
chr4 (251-293)||(27992132-27992174)
chr4 (94-168)||(37999462-37999536)
chr4 (85-138)||(4787131-4787184)
chr4 (42-87)||(24974163-24974208)
chr4 (143-187)||(7281323-7281367)
chr4 (85-156)||(19487536-19487608)
chr4 (43-87)||(27992132-27992176)
chr4 (145-184)||(26252986-26253025)
chr4 (24-87)||(33164522-33164584)
chr4 (213-248)||(35313982-35314017)
chr4 (37-132)||(54208191-54208286)
chr4 (118-156)||(14619936-14619974)
chr4 (142-184)||(35313954-35313996)
chr4 (337-390)||(24001542-24001595)
chr4 (141-185)||(23242520-23242564)
chr4 (251-315)||(36217866-36217929)
chr4 (212-252)||(49261887-49261927)
[»] scaffold0005 (3 HSPs)
scaffold0005 (26-105)||(269110-269188)
scaffold0005 (118-156)||(197403-197441)
scaffold0005 (228-310)||(269110-269191)
[»] scaffold0121 (1 HSPs)
scaffold0121 (73-134)||(4589-4650)
[»] scaffold0085 (1 HSPs)
scaffold0085 (42-100)||(46599-46657)
[»] scaffold0163 (1 HSPs)
scaffold0163 (51-87)||(35801-35837)
[»] scaffold0027 (1 HSPs)
scaffold0027 (90-158)||(36218-36286)


Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 40266691 - 40266282
Alignment:
Q  1 tcacattgaatgagataagacaatgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  40266691 tcacattgaatgagataagacaatgaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaact 40266592  T
Q  101 cacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacac-----------tagcgtgagttaactcatgctg 189  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||           ||||||||||||||||||||||    
T  40266591 cacgctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcacgcagagatttacacaggatttacactagcgtgagttaactcatgctg 40266492  T
Q  190 agagtgaatgagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatcca 289  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40266491 agagtgaatgaggtttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatcca 40266392  T
Q  290 tttgggctaaagggcagaattctaagacaatatccattgttgaattggttttgtaaggttgagtgaaacccaacctaaattctaatatgatatcagagtc 389  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40266391 tttgggttaaagggcagaattctaagacaatatccattgttgaattggttttgtaaggttgagtgaaccccaacctaaattctaatatgatatcagagtc 40266292  T
Q  390 tctccttgat 399  Q
    ||||||||||    
T  40266291 tctccttgat 40266282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 40266591 - 40266667
Alignment:
Q  235 gagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| |||||||||    
T  40266591 gagttaactcacgcatgggcattttggtcatttactttgggaatgagcaaatccatttgggtaaaagagcagaattc 40266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 40266370 - 40266446
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactc 101  Q
    ||||||||| |||| ||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||    
T  40266370 gaattctgccctttaacccaaatggatttgttcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactc 40266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 22252316 - 22252221
Alignment:
Q  41 cccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||| ||||  |||||  || ||||| |||| ||||||||||| |||||||||||    
T  22252316 cccaaatggatttgctcgttcccaaagtaaatgaccaaaatgcccatgcgatagttaggtcgcgctattgttcaatttgcgtgacttaactcacgc 22252221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 25759839 - 25759921
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    ||||||||||||||| | ||||| |||| |||||||||  |||| |||||||||||||| | ||||||||||||||||||||||    
T  25759839 tgaattctgctcttt-atccaaacggatctgctcattcctaaagtaaatgaccaaaatgtctctgcgtgagttaactcacgcta 25759921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 22252267 - 22252317
Alignment:
Q  246 cgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggc 296  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  22252267 cgcatgggcattttggtcatttactttgggaacgagcaaatccatttgggc 22252317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 1145868 - 1145805
Alignment:
Q  93 agttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| | ||  ||||||||||||    
T  1145868 agttaactcacgctaatgtaaaatttgcatgagttaactcacgctgcgtgtcttaagtcacgca 1145805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 7164265 - 7164326
Alignment:
Q  95 ttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    |||||||||||||||||||||||||| |||||||| ||||||  | ||| ||||||||||||    
T  7164265 ttaactcacgctaatgttaaatttgcatgagttaattcacgccgcgtgacttaagtcacgca 7164326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 7826102 - 7826053
Alignment:
Q  199 gagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgc 248  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  7826102 gagatttacactagcgtgagttaactcatgttgcgggagttaactcacgc 7826053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 25787920 - 25787840
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgc 105  Q
    ||||||||||||||| | ||||| || | ||||||||  ||||  ||||||||||||||||||||| |||||||||||||||    
T  25787920 tgaattctgctcttt-atccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcacgc 25787840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 15798919 - 15798867
Alignment:
Q  83 cccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    |||||||||||||||||||| |||| |||||| ||||||||| ||||||||||    
T  15798919 cccctgcgtgagttaactcatgctagtgttaattttgcgtgacttaactcacg 15798867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 42690531 - 42690471
Alignment:
Q  199 gagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcatttt 259  Q
    ||||||||||| ||||||||||| ||||||||| | ||||||||||||| | |||||||||    
T  42690531 gagatttgcactagcgtgagttatctcatgctgtgagagttaactcacgtaggggcatttt 42690471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 17644592 - 17644529
Alignment:
Q  93 agttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    ||||||||||||||| |||||||||| | |||||||||||||||| | ||| |||| |||||||    
T  17644592 agttaactcacgctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgca 17644529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 1145855 - 1145924
Alignment:
Q  211 agcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatga 280  Q
    |||||||||||||| |||  |||  |||||||||| | | |||||||||| |||||||||||||||||||    
T  1145855 agcgtgagttaactaatgtagcgtaagttaactcatgtaagggcattttgatcatttactttgggaatga 1145924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 16879871 - 16879822
Alignment:
Q  86 ctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    ||||||||||||| ||||||||||||||||||||||| | |||| |||||    
T  16879871 ctgcgtgagttaagtcacgctaatgttaaatttgcgtaatttaagtcacg 16879822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 17344843 - 17344802
Alignment:
Q  94 gttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  17344843 gttaactcacgctagtgttaattttgcgtgagttaactcacg 17344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 6636908 - 6636964
Alignment:
Q  238 ttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgg 294  Q
    |||||||||||| ||  |||||||||||||| |||||||||||||| || |||||||    
T  6636908 ttaactcacgcagggatattttggtcatttattttgggaatgaacatattcatttgg 6636964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 25759915 - 25759840
Alignment:
Q  235 gagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    |||||||||||||||  | ||||||||||||||||||| ||||||| || |||| ||| || ||||| |||||||||    
T  25759915 gagttaactcacgcagagacattttggtcatttactttaggaatgagcagatccgttt-ggataaagagcagaattc 25759840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 40266797 - 40266761
Alignment:
Q  312 taagacaatatccattgttgaattggttttgtaaggt 348  Q
    |||||||||||||||||||||| ||||||||||||||    
T  40266797 taagacaatatccattgttgaactggttttgtaaggt 40266761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 25994980 - 25994909
Alignment:
Q  118 tgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactcatgctg 189  Q
    ||||||| |||| ||||||| |||||||||| |||||| |  ||| ||||| ||||||||||||||| ||||    
T  25994980 tgcgtgacttaagtcacgctgcatgagttaactcacgcgagaattaacacttgcgtgagttaactcacgctg 25994909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 36317883 - 36317824
Alignment:
Q  74 accaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactca 133  Q
    |||||||||| ||||||||||  |||||||||||  ||||||||||| || |||||||||    
T  36317883 accaaaatgcacctgcgtgagaaaactcacgctagagttaaatttgcatgggttaactca 36317824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 18673675 - 18673609
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcac 103  Q
    |||||||||| |  ||||||||||| ||||  ||| ||| ||||| |||||||||||||||||||||    
T  18673675 tttacccaaaagtttttgctcattcccaaataaaaagacaaaaatacccctgcgtgagttaactcac 18673609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 25787839 - 25787889
Alignment:
Q  230 tgcgggagttaactcacgcatgggcattttggtcatttactttgggaatga 280  Q
    |||| ||||||||||| ||| |||||||||||||||||| ||||| |||||    
T  25787839 tgcgtgagttaactcatgcaggggcattttggtcatttattttggaaatga 25787889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 7164276 - 7164207
Alignment:
Q  211 agcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatga 280  Q
    ||||||||||||  |||||  || ||||||||||| | |  ||||||||||||||||||||| |||||||    
T  7164276 agcgtgagttaatccatgcaacgtgagttaactcatgtagaggcattttggtcatttactttaggaatga 7164207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 33037400 - 33037429
Alignment:
Q  251 gggcattttggtcatttactttgggaatga 280  Q
    ||||||||||||||||||||||||||||||    
T  33037400 gggcattttggtcatttactttgggaatga 33037429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 1145199 - 1145171
Alignment:
Q  252 ggcattttggtcatttactttgggaatga 280  Q
    |||||||||||||||||||||||||||||    
T  1145199 ggcattttggtcatttactttgggaatga 1145171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 7826101 - 7826073
Alignment:
Q  158 agatttacactagcgtgagttaactcatg 186  Q
    |||||||||||||||||||||||||||||    
T  7826101 agatttacactagcgtgagttaactcatg 7826073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 15798860 - 15798911
Alignment:
Q  132 cacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    ||||| || |||||||||||||||||| ||| |||||||| ||||||||||||    
T  15798860 cacgcaacgtgagttaagtcacgcaaa-attaacactagcatgagttaactca 15798911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 25760591 - 25760512
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgc 105  Q
    |||||||||||||| ||||||| || | ||||| |||  |||| |||||| ||||||  ||||| ||||||||||||||||    
T  25760591 gaattctgctcttt-acccaaacggttatgctcgttccaaaagtaaatgatcaaaatatccctgtgtgagttaactcacgc 25760512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 26092657 - 26092589
Alignment:
Q  90 gtgagttaactcacgctaatgttaaatt-tgcgtgagttaactcacgctacatgagttaagtcacgcaa 157  Q
    |||||||||||| |||   |||||| || |||||||||||||||| || |||||| |||||||||||||    
T  26092657 gtgagttaactctcgcaggtgttaatttctgcgtgagttaactcatgcgacatgacttaagtcacgcaa 26092589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 40266556 - 40266604
Alignment:
Q  88 gcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    |||||||||||||||||| ||| | | ||| ||||||||||||||||||    
T  40266556 gcgtgagttaactcacgcaaatttaacattagcgtgagttaactcacgc 40266604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 42690559 - 42690499
Alignment:
Q  129 actcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactcatgctg 189  Q
    |||||||| || |||||||| ||| ||  |||||| ||||||||||||||| |||||||||    
T  42690559 actcacgcaacgtgagttaactcatgccgagatttgcactagcgtgagttatctcatgctg 42690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 44 - 311
Target Start/End: Complemental strand, 5603221 - 5602944
Alignment:
Q  44 aaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatga 143  Q
    ||||||||||||||||| |||||| |||||| |||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||  ||    
T  5603221 aaatggatttgctcattttcaaagtaaatgatcaaagtgtccctgcatgagttaactcacgctagtgttaaatttgcgtgagttaactcacgttacgcga 5603122  T
Q  144 gttaagtcacgcaaagatttaca-----------ctagcgtgagttaactcatgctgagagtgaatgagatttgcacaagcgtgagttaactcatgctgc 232  Q
    ||||||||||  | |||||||||           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  5603121 gttaagtcacatagagatttacataggatttatactagcgtgagttaactcatgctgagagtgaatgagatttgcactagcgtgagttaactcatactgc 5603022  T
Q  233 gggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    |||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  5603021 gggagttaactcacacaggggcattttggtcatttactttgggaatgagcaaatccatttggg-taaagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 5602943 - 5603019
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactc 101  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  5602943 tgaattctgctcttt-acccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccctgtgtgagttaactc 5603019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 10884455 - 10884387
Alignment:
Q  199 gagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcattt 267  Q
    ||||||| ||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10884455 gagatttacactagagtgagttaactcatgttgcgggagttaactcacgcaggggcattttggtcattt 10884387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 10884569 - 10884457
Alignment:
Q  23 atgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgt 122  Q
    |||||||||||||||| |||||||   | ||||||||||||||   || |||||||||| ||||| |    |||||||||||||| ||||||||||||||    
T  10884569 atgaattctgctcttt-acccaaaaaaaattgctcattctcaactgaactgaccaaaatacccctacacatgttaactcacgctagtgttaaatttgcgt 10884471  T
Q  123 gagttaactcacgc 136  Q
    ||||||||||||||    
T  10884470 gagttaactcacgc 10884457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 42497934 - 42497872
Alignment:
Q  121 gtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    ||||||||||||||||| ||||| |||| || ||||||| ||||||||||||||||||||||||    
T  42497934 gtgagttaactcacgctgcatgacttaaatctcgcaaag-tttacactagcgtgagttaactca 42497872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 33617656 - 33617705
Alignment:
Q  38 ttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  33617656 ttacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccct 33617705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 2094354 - 2094310
Alignment:
Q  93 agttaactcacgctaatgttaaatttgcgtgagttaactcacgct 137  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  2094354 agttaactcaggccaatgttaaatttgcgtgagttaactcacgct 2094310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 10884471 - 10884426
Alignment:
Q  141 tgagttaagtcacgcaaagatttacactagcgtgagttaactcatg 186  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||    
T  10884471 tgagttaactcacgcagagatttacactagagtgagttaactcatg 10884426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 13280745 - 13280794
Alignment:
Q  85 cctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcac 134  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| ||||    
T  13280745 cctgcgtgagttaactcacgctagtgttaaatatgcgtgacttaattcac 13280794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 10884387 - 10884419
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactc 101  Q
    |||||||||||||||||||||||||||||||||    
T  10884387 aaatgaccaaaatgcccctgcgtgagttaactc 10884419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 5270152 - 5270093
Alignment:
Q  77 aaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    ||||| ||||||  |||||||||  ||||||||||||||| ||||||| |||||||||||    
T  5270152 aaaatacccctgattgagttaaccaacgctaatgttaaatctgcgtgacttaactcacgc 5270093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 32713288 - 32713222
Alignment:
Q  89 cgtgagttaactcacgctaatgttaaattt-gcgtgagttaactcacgctacatgagttaagtcacg 154  Q
    ||||||||||||||||| | |||||| ||| ||||||||||||||||||  | ||| ||||||||||    
T  32713288 cgtgagttaactcacgcaagtgttaattttagcgtgagttaactcacgcagcgtgacttaagtcacg 32713222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 32713238 - 32713288
Alignment:
Q  86 ctgcgtgagttaactcacgctaatgttaa-atttgcgtgagttaactcacg 135  Q
    |||||||||||||||||||||||  |||| | |||||||||||||||||||    
T  32713238 ctgcgtgagttaactcacgctaaaattaacacttgcgtgagttaactcacg 32713288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 33401425 - 33401467
Alignment:
Q  43 caaatggatttgctcattctcaaagcaaatgaccaaaatgccc 85  Q
    |||||||||| |||||||||||||| |||||||| ||||||||    
T  33401425 caaatggattcgctcattctcaaagtaaatgaccgaaatgccc 33401467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 37260980 - 37260930
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    |||||||||| || ||||| ||||||||||| ||||| |||||||||||||    
T  37260980 tttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccct 37260930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 42497832 - 42497902
Alignment:
Q  51 tttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcg 121  Q
    |||||||||||||||   |||| | |||||||||| || |||||||||||||||||| ||| || ||||||    
T  42497832 tttgctcattctcaactaaaataatcaaaatgcccatgtgtgagttaactcacgctagtgtaaactttgcg 42497902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 42883764 - 42883722
Alignment:
Q  94 gttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    |||||||||||| | |||||||||||| |||||||||||||||    
T  42883764 gttaactcacgcaagtgttaaatttgcatgagttaactcacgc 42883722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 3792296 - 3792376
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgct 106  Q
    ||||||||||| || |||||||||  | | ||||||||||||  ||||| ||||||| ||| | ||||||||||||||||||    
T  3792296 gaattctgctcatt-acccaaatgattctactcattctcaaaataaatgtccaaaatacccttacgtgagttaactcacgct 3792376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 28446596 - 28446547
Alignment:
Q  38 ttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||||||| |||||||| ||||| |||||||  ||||||||||    
T  28446596 ttacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccct 28446547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 47543047 - 47543014
Alignment:
Q  150 tcacgcaaagatttacactagcgtgagttaactc 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  47543047 tcacgcagagatttacactagcgtgagttaactc 47543014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 28446549 - 28446593
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    ||||||||  |||||||||||||||||||| | ||||||||||||    
T  28446549 gggcatttcagtcatttactttgggaatgagcgaatccatttggg 28446593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 32713222 - 32713286
Alignment:
Q  120 cgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    ||||| |||| ||||||| | |||||||| |||||| || ||| ||||| |||||||||||||||    
T  32713222 cgtgacttaagtcacgctgcgtgagttaactcacgctaaaattaacacttgcgtgagttaactca 32713286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 33617703 - 33617659
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    |||||||| |||||||||||||| |||||| | ||||||||||||    
T  33617703 gggcatttcggtcatttactttgagaatgagcgaatccatttggg 33617659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 313
Target Start/End: Complemental strand, 3588612 - 3588338
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    |||||||||||| |||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  3588612 tttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgttaaattt--gtgagttaactcacgc 3588515  T
Q  137 tacatgagttaagtcacgca-----------aagatttacactagcgtgagttaactcatgctgagagtgaatgagatttgcacaagcgtgagttaactc 225  Q
    ||| ||||| ||||||||||           |||||||||||||||||| |||||||||           | |||||||||||| |||| ||||||||||    
T  3588514 tacgtgagtcaagtcacgcagagatttacacaagatttacactagcgtgggttaactca----------cactgagatttgcactagcgggagttaactc 3588425  T
Q  226 atgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattcta 313  Q
    ||||| ||||||||||||||   | ||  ||||||||||||||||||| |||||| |||||||| || || ||||| |||||||||||    
T  3588424 atgctacgggagttaactcatatagggttattttggtcatttactttgagaatgatcaaatccaatt-ggataaagagcagaattcta 3588338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 3588548 - 3588624
Alignment:
Q  235 gagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattct 312  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||    
T  3588548 gagttaactcacgcaggggcattttggtcatttaatttgggaatgagcaaattcatttggg-taaagagtagaattct 3588624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 26150029 - 26149959
Alignment:
Q  84 ccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacg 154  Q
    ||||| ||||||||||||| ||||||||||| | |||||||||||||| || || ||||||||||||||||    
T  26150029 ccctgtgtgagttaactcatgctaatgttaattctgcgtgagttaacttacactgcatgagttaagtcacg 26149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 27235573 - 27235457
Alignment:
Q  51 tttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagt 150  Q
    ||||||||||||||||| || |||| |||||  |||| |    ||||||| |||||||||||||||||||||||||||| ||||||  | |||||||| |    
T  27235573 tttgctcattctcaaagaaattgactaaaatatccctacacatgttaacttacgctaatgttaaatttgcgtgagttaaatcacgcagcgtgagttaact 27235474  T
Q  151 cacgcaaagatttacac 167  Q
     | ||| ||||||||||    
T  27235473 aatgcagagatttacac 27235457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 1349297 - 1349187
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtga 124  Q
    |||||||||||||| ||||||| |  ||||||||||| | ||  ||||||||||||| ||| | ||   |||||||||| ||| ||||||||||||||||    
T  1349297 gaattctgctcttt-acccaaaagtttttgctcattcccgaatgaaatgaccaaaatacccttacgcatgttaactcacactattgttaaatttgcgtga 1349199  T
Q  125 gttaactcacgc 136  Q
    ||| ||||||||    
T  1349198 gttgactcacgc 1349187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 1349058 - 1349128
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    |||||||||| |  ||||||||||| |||   |||||||||||||| ||||||||||||||||||||||||    
T  1349058 tttacccaaaagtttttgctcattcccaagtgaaatgaccaaaatgtccctgcgtgagttaactcacgcta 1349128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 17875384 - 17875312
Alignment:
Q  84 ccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    |||||||||||||||||||| ||| |||| ||||||||||| |||||||||| | | ||| |||| |||||||    
T  17875384 ccctgcgtgagttaactcacactagtgtttaatttgcgtgacttaactcacgttgcgtgacttaactcacgca 17875312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 150899 - 150942
Alignment:
Q  141 tgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  150899 tgagttaaatcacgcaaagatatacactagcgtgagttaactca 150942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 14998970 - 14998883
Alignment:
Q  51 tttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgcta 138  Q
    ||||||||||| |||   ||||| | ||| | ||| |||||||||||||||||| || ||||||||||| |||| |||||||||||||    
T  14998970 tttgctcattcccaactgaaatgtcaaaattacccatgcgtgagttaactcacgttagtgttaaatttgtgtgacttaactcacgcta 14998883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 151006 - 150928
Alignment:
Q  77 aaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgc 155  Q
    ||||||| || ||||||||||||| |||||||| |||| | ||||||| |||||||||| | | |||||||| ||||||    
T  151006 aaaatgctccagcgtgagttaacttacgctaatattaattctgcgtgacttaactcacgttgcgtgagttaactcacgc 150928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 27235373 - 27235311
Alignment:
Q  198 tgagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttg 260  Q
    |||||||| ||| | ||||||||||| |||||||||||||||||||||| || || |||||||    
T  27235373 tgagatttacactaccgtgagttaacacatgctgcgggagttaactcacacaaggacattttg 27235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 427975 - 428055
Alignment:
Q  77 aaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaa 157  Q
    |||||||||||||||||||||||| | | || |||||| |||| |||| |||||||||||    |||||||| ||||||||    
T  427975 aaaatgcccctgcgtgagttaacttatgttagtgttaattttgtgtgacttaactcacgcagagtgagttaactcacgcaa 428055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 3588340 - 3588415
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactc 101  Q
    |||||||||||||| | |||| |||||||| |||||||||||| |||||||||||||  ||||   |||||||||||    
T  3588340 gaattctgctcttt-atccaattggatttgatcattctcaaagtaaatgaccaaaataaccctatatgagttaactc 3588415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 5967256 - 5967318
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattctaa 314  Q
    |||||||| | ||||||||||||||||||| | |||||||||||| ||| | ||||||||||||    
T  5967256 gggcatttcgatcatttactttgggaatgagcgaatccatttggg-taatgagcagaattctaa 5967318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 150928 - 150997
Alignment:
Q  119 gcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactcatgctg 189  Q
    |||||||||||||||||| || |||||||||||||||| | ||| | | |||||| |||||||||| ||||    
T  150928 gcgtgagttaactcacgcaacgtgagttaagtcacgcaga-attaatattagcgtaagttaactcacgctg 150997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 5967315 - 5967254
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||| || ||||||||||||| |||||||| ||||| |||||| | ||||||||||    
T  5967315 gaattctgctcatt-acccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccct 5967254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 15892213 - 15892151
Alignment:
Q  122 tgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||||||| ||||||| | | |||||| ||||||| ||||| |||||| ||||||||||||||    
T  15892213 tgagttaagtcacgctgcgttagttaactcacgcagagattaacactaacgtgagttaactca 15892151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 17875312 - 17875377
Alignment:
Q  118 tgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||||||||||| |||||| || ||||||||||||||||||  |  ||||||| |||||||||||||    
T  17875312 tgcgtgagttaagtcacgcaacgtgagttaagtcacgcaaa-ttaaacactagtgtgagttaactca 17875377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 9448344 - 9448456
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgt-taaatttgcgt 122  Q
    |||||| |||||||| ||||||| || |||| |||||| |||   ||||||||||||| || || |||||||||| |||||||| ||| ||  | |||||    
T  9448344 tgaattttgctcttt-acccaaaaggttttgatcattcccaagataaatgaccaaaataccgctacgtgagttaagtcacgctagtgtatacctctgcgt 9448442  T
Q  123 gagttaactcacgc 136  Q
    || |||||||||||    
T  9448443 gacttaactcacgc 9448456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 32035808 - 32035877
Alignment:
Q  86 ctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgc 155  Q
    |||||||||||||||||||||| ||||||| |||  ||| ||||  |||||| | |||||||| ||||||    
T  32035808 ctgcgtgagttaactcacgctagtgttaaaattgtatgacttaatccacgctgcgtgagttaactcacgc 32035877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 27235388 - 27235340
Alignment:
Q  141 tgagttaagtcacgcaaagatttacactagcgtgagttaactcatgctg 189  Q
    |||||||| ||||||  |||||||||||| ||||||||||| |||||||    
T  27235388 tgagttaactcacgctgagatttacactaccgtgagttaacacatgctg 27235340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 27855902 - 27855854
Alignment:
Q  89 cgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgct 137  Q
    ||||||||||||||||||| |||||| | ||||||| |||| |||||||    
T  27855902 cgtgagttaactcacgctagtgttaattctgcgtgacttaattcacgct 27855854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 36916164 - 36916132
Alignment:
Q  106 taatgttaaatttgcgtgagttaactcacgcta 138  Q
    ||||||||| |||||||||||||||||||||||    
T  36916164 taatgttaattttgcgtgagttaactcacgcta 36916132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 28139513 - 28139384
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtga 124  Q
    |||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  28139513 gaattctgct-ttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgttaaatttgcatga 28139415  T
Q  125 gttaactcacgctacatgagttaagtcacgc 155  Q
    ||||| | ||||| | |||||||| ||||||    
T  28139414 gttaagttacgctgcgtgagttaactcacgc 28139384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 28138759 - 28138840
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    |||||||||||||| |||||||||  ||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||    
T  28138759 gaattctgctcttt-acccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctgcgtgacttaactcacgcta 28138840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 28139438 - 28139514
Alignment:
Q  235 gagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattct 312  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||  ||||||||||    
T  28139438 gagttaactcacgcaggggcattttggtcatttactttgggaatgggcaaatccatttggg-taaaaagcagaattct 28139514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 5728182 - 5728237
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtga 124  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5728182 aaatgatcaaaatgcccctgcgtgagttaattcacgctaatgttaaatttgcgtga 5728237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 149038 - 149102
Alignment:
Q  91 tgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgc 155  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||||    
T  149038 tgagttaactcacgctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcacgc 149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 28138834 - 28138756
Alignment:
Q  235 gagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattctaa 314  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||| ||||  |||||||| ||||| ||||||||||||    
T  28138834 gagttaagtcacgcaggggtattttggtcatttactttgggaatgagcaaaatcatttggg-taaagagcagaattctaa 28138756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 16984381 - 16984439
Alignment:
Q  84 ccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatg 142  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  16984381 ccctgtgtgagttaactcacgctagtgttaaatatgcgtgagttaactcacgctgcatg 16984439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 2847281 - 2847213
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaa-atttgcgtgagttaactcacgc 136  Q
    ||||||| | |||||||||||||||||||||||| |||||||| || || |||||||||||||||||||    
T  2847281 aaatgactataatgcccctgcgtgagttaactcatgctaatgtaaatatctgcgtgagttaactcacgc 2847213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 18146169 - 18146251
Alignment:
Q  73 gaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgc 155  Q
    ||||||||||  |||||||||||||||||| |||| ||||||||||| ||| ||||| ||||| | |  ||||||||||||||    
T  18146169 gaccaaaatgttcctgcgtgagttaactcatgctagtgttaaatttgtgtgggttaagtcacgttgcgagagttaagtcacgc 18146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 24857204 - 24857139
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcac 134  Q
    |||||||||||||  ||||||||||||||||||| |||  |||||| ||| |||||||||||||||    
T  24857204 aaatgaccaaaatatccctgcgtgagttaactcaagctggtgttaattttacgtgagttaactcac 24857139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 15819770 - 15819838
Alignment:
Q  87 tgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgc 155  Q
    ||||||||||||||||| ||| |||||| ||||  ||||||||| |||||| | |||||||||||||||    
T  15819770 tgcgtgagttaactcacactagtgttaattttgtctgagttaacacacgctgcgtgagttaagtcacgc 15819838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 23345028 - 23345099
Alignment:
Q  214 gtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaa 285  Q
    |||||||||||||||| ||| ||||||||| ||||||||||| | ||  |||||| ||||||||||| ||||    
T  23345028 gtgagttaactcatgcagcgtgagttaacttacgcatgggcaatatgaacatttattttgggaatgagcaaa 23345099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 11823725 - 11823787
Alignment:
Q  73 gaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||   || |||||||||||    
T  11823725 gaccaaaatgcccctgcgtgagttaactcacgttggtgttaaatttttttgggttaactcacg 11823787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 5238 - 5189
Alignment:
Q  38 ttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||||||| |||||||| ||||| |||||||| ||||||||||    
T  5238 ttacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccct 5189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 5191 - 5235
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||    
T  5191 gggcatttcggtcatttactttgggaatgagcgaatccatttggg 5235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 12082358 - 12082294
Alignment:
Q  120 cgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||||||||||||||||    ||| |||||||||||||| ||| |||||||||| ||||||||||    
T  12082358 cgtgagttaactcacgcagtgtgacttaagtcacgcaaaaattaacactagcgtaagttaactca 12082294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 33839522 - 33839471
Alignment:
Q  23 atgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgac 75  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| |||||||    
T  33839522 atgaattctgctcttt-atccaaatggattcgctcattctcaaagtaaatgac 33839471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 34116030 - 34116090
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagtta 97  Q
    ||||||||||||||||||||||||  |||||  |||||||||||||  | |||||||||||    
T  34116030 tttacccaaatggatttgctcatttccaaagttaatgaccaaaatgttcttgcgtgagtta 34116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 34116090 - 34116034
Alignment:
Q  239 taactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    ||||||||||| |  ||||||||||||| ||||||| ||||| ||||||||||||||    
T  34116090 taactcacgcaagaacattttggtcattaactttggaaatgagcaaatccatttggg 34116034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 19932001 - 19931954
Alignment:
Q  87 tgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcac 134  Q
    |||||||||||| |||||||| |||||||||||| ||| |||||||||    
T  19932001 tgcgtgagttaagtcacgctagtgttaaatttgcatgacttaactcac 19931954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 2377205 - 2377243
Alignment:
Q  75 ccaaaatgcccctgcgtgagttaactcacgctaatgtta 113  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  2377205 ccaaaatacccctgcgtgagttaactcacgcaaatgtta 2377243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 10526989 - 10527062
Alignment:
Q  237 gttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    ||||||| |||||  |||| ||||| ||||||||||||||||||   |||||||||||| ||||| |||||||||    
T  10526989 gttaacttacgcaaaggcaatttggacatttactttgggaatgattgaatccatttggg-taaagagcagaattc 10527062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 31853306 - 31853243
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactcacgctaatgtta-aatttgcgtgagttaactca 133  Q
    ||||||||||||| ||  ||||||||||||||||||||| ||||| ||||  ||||||||||||||    
T  31853306 aaatgaccaaaatacc--tgcgtgagttaactcacgctagtgttataattcacgtgagttaactca 31853243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 8460207 - 8460247
Alignment:
Q  152 acgcaaagatttacactagcgtgagttaactcatgctgaga 192  Q
    ||||| ||||||||||||| ||||||||| |||||||||||    
T  8460207 acgcagagatttacactagtgtgagttaattcatgctgaga 8460247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 12082286 - 12082358
Alignment:
Q  83 cccctgcgtgagttaactcacgctaatgttaa-atttgcgtgagttaactcacgctacatgagttaagtcacg 154  Q
    |||||||||||||||||| |||||| ||||||  ||||||||| |||| |||| || | |||||||| |||||    
T  12082286 cccctgcgtgagttaacttacgctagtgttaatttttgcgtgacttaagtcacactgcgtgagttaactcacg 12082358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 19931934 - 19931997
Alignment:
Q  120 cgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||||||||||||||| ||  |||||||||||| |||||  || |||||||||||| ||||||||    
T  19931934 cgtgagttaactcacgttatgtgagttaagtcatgcaaa-tttaacactagcgtgacttaactca 19931997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 23345045 - 23345001
Alignment:
Q  86 ctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaac 130  Q
    |||| ||||||||||||| ||| |||||||||||||||| |||||    
T  23345045 ctgcatgagttaactcacactagtgttaaatttgcgtgaattaac 23345001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 25000492 - 25000544
Alignment:
Q  338 ttttgtaaggttgagtgaaacccaacctaaattctaatatgatatcagagtct 390  Q
    |||| ||||||||||| |||| ||||| ||||||||| ||| |||||||||||    
T  25000492 ttttataaggttgagttaaactcaaccaaaattctaagatggtatcagagtct 25000544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 26009369 - 26009424
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaat 81  Q
    |||||||||||||| ||||||| |  ||||||||||| ||||| |||||||||||||    
T  26009369 gaattctgctcttt-acccaaacgattttgctcattcccaaagtaaatgaccaaaat 26009424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 26009424 - 26009369
Alignment:
Q  255 attttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    |||||||||||||||||||||||||| ||||  | |||||| ||||| |||||||||    
T  26009424 attttggtcatttactttgggaatgagcaaaatcgtttggg-taaagagcagaattc 26009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 41957646 - 41957567
Alignment:
Q  23 atgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcac 103  Q
    ||||||| |||||||| ||||||| |  |||| |||||| ||||| |||||||||||||  | |||||||| |||||||||    
T  41957646 atgaattttgctcttt-acccaaacgattttgatcattcccaaagtaaatgaccaaaatatctctgcgtgacttaactcac 41957567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 12965049 - 12965160
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtga 124  Q
    |||||||||||||| ||||||| |  | |||||||| |||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||| || ||    
T  12965049 gaattctgctcttt-acccaaacgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcacgctaatgttaaatttacgaga 12965147  T
Q  125 gttaactcacgct 137  Q
    |||||||||||||    
T  12965148 gttaactcacgct 12965160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 25389929 - 25389856
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaa 98  Q
    ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  25389929 tgaattctgctcttt-actcaaatggatttgctcattctcaaagtaaatgaccaaaatgcccttgcgtgagttaa 25389856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 22787991 - 22788063
Alignment:
Q  238 ttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  22787991 ttaactcacgtaggggtattttggtcatttactttgggaatgaacaaatccatttggg-taaagagcagaattc 22788063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 28360161 - 28360262
Alignment:
Q  211 agcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaatt 310  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||   ||| |||||| ||||  |||||||| ||||| ||||||||    
T  28360161 agcgtgagttaactcatgttgtgggagttaactcacgcaggggcattttggtcttttcacttgagaatgagcaaaaacatttggg-taaagagcagaatt 28360259  T
Q  311 cta 313  Q
    |||    
T  28360260 cta 28360262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 22788063 - 22787991
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaa 98  Q
    |||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||| ||||| ||||||||||    
T  22788063 gaattctgctcttt-acccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacgtgagttaa 22787991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 25389856 - 25389928
Alignment:
Q  238 ttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattc 311  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||||    
T  25389856 ttaactcacgcaagggcattttggtcatttactttgagaatgagcaaatccatttgag-taaagagcagaattc 25389928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 28360260 - 28360185
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactc 101  Q
    |||||||||||||| |||||||||  |||||||||||||||   ||| |||||||||||||||||||||||||||||    
T  28360260 gaattctgctcttt-acccaaatgtttttgctcattctcaagtgaaaagaccaaaatgcccctgcgtgagttaactc 28360185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 41101211 - 41101301
Alignment:
Q  90 gtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaa 180  Q
    |||||||||||||||||| |||||||| | ||||| |||||||||| | | |||||||| ||||| | |||| |||||||| |||||||||    
T  41101211 gtgagttaactcacgctagtgttaaatctccgtgacttaactcacgttgcgtgagttaactcacgtagagatctacactagtgtgagttaa 41101301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 8241897 - 8241818
Alignment:
Q  101 cacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaa 180  Q
    ||||||| |||||||| || |||| |||||| || || | |||||||| ||||||| |||||||||||||||||||||||    
T  8241897 cacgctagtgttaaatctgagtgacttaacttacactgcgtgagttaactcacgcagagatttacactagcgtgagttaa 8241818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 19984781 - 19984702
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgc 105  Q
    |||||||||||||| ||||||| || | ||||| ||   |||| ||||||||||||| |||||||||||||||||||||||    
T  19984781 gaattctgctcttt-acccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaactcacgc 19984702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 28360025 - 28360131
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtg 123  Q
    ||||||||||||||| |||||||    ||| ||||||| ||||| || |||||||||| || || ||   |||||||||||||| |||||||||||||||    
T  28360025 tgaattctgctcttt-acccaaacatttttactcattc-caaagaaactgaccaaaatacctctacgcatgttaactcacgctagtgttaaatttgcgtg 28360122  T
Q  124 agttaactc 132  Q
    |||||||||    
T  28360123 agttaactc 28360131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 22727661 - 22727735
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaac 99  Q
    ||||| ||||||||| |||||||| |||||||| |||| ||||| |||||||| |||| ||||| |||||||||||    
T  22727661 tgaatcctgctcttt-acccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaac 22727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 25770413 - 25770354
Alignment:
Q  77 aaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    ||||||| | ||||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  25770413 aaaatgctcatgcgtgagttaactcacgctagtgttaaatctgcgtgacttaagtcacgc 25770354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 8273245 - 8273306
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||| || ||||||||||||| |||||||| ||||| |||||||| ||||||||||    
T  8273245 gaattctgctcatt-acccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccct 8273306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 41101275 - 41101212
Alignment:
Q  120 cgtgagttaactcacgctacatgagttaagtcacgcaaagattt-acactagcgtgagttaactca 184  Q
    ||||||||||||||||| || ||||||||||||||   |||||| |||||||||||||||||||||    
T  41101275 cgtgagttaactcacgcaacgtgagttaagtcacg--gagatttaacactagcgtgagttaactca 41101212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 494969 - 495025
Alignment:
Q  236 agttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttg 293  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  494969 agttaacttacgca-gggcattttggtcatttactttggcaatgagcaaatctatttg 495025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 18877892 - 18877945
Alignment:
Q  84 ccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgct 137  Q
    ||||||||||||||||| |||||| |||||||| || |||| ||||||||||||    
T  18877892 ccctgcgtgagttaacttacgctagtgttaaatctgtgtgacttaactcacgct 18877945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 495025 - 494962
Alignment:
Q  43 caaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    ||||| ||||||||||||  ||||| |||||||||||||| |||||||| |||||||| ||||||    
T  495025 caaatagatttgctcattgccaaagtaaatgaccaaaatg-ccctgcgtaagttaacttacgcta 494962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 8273304 - 8273260
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||    
T  8273304 gggcatttcggtcatttactttgggaatgagcgaatccatttggg 8273260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 19984701 - 19984743
Alignment:
Q  230 tgcgggagttaactcacgcatgggcattttggtcatttacttt 272  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||    
T  19984701 tgcgtgagttaactcacgcaggggtattttggtcatttacttt 19984743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 22727735 - 22727677
Alignment:
Q  237 gttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    ||||||||||| | ||| |||| ||||||||||||||||||| | |||||| |||||||    
T  22727735 gttaactcacgtaggggtatttgggtcatttactttgggaataagcaaatctatttggg 22727677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 20686852 - 20686799
Alignment:
Q  54 gctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    ||||||||  |||| ||| | |||||||||||||||||||||||| ||||||||    
T  20686852 gctcattcctaaagtaaaagtccaaaatgcccctgcgtgagttaagtcacgcta 20686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 24929094 - 24929146
Alignment:
Q  88 gcgtgagttaactcacgctaatgtt-aaatttgcgtgagttaactcacgctac 139  Q
    |||||||||||||||||||| |||| ||| | |||||| ||||||||||||||    
T  24929094 gcgtgagttaactcacgctagtgttaaaactagcgtgacttaactcacgctac 24929146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 2652420 - 2652489
Alignment:
Q  86 ctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgc 155  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||| || |||||||||||||||    
T  2652420 ctgcgtgagttaactcacgctagtgttaaatttgcatgacttaactcacgcaacgtgagttaagtcacgc 2652489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 8150180 - 8150277
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcac 134  Q
    |||||||||| |  ||||||||||| ||||| || |||||||||| ||||| |||  ||||||||| ||||||||||||| |||||||||||||||||    
T  8150180 tttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactcatgctaatgttaaatatgcgtgagttaactcac 8150277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 53814580 - 53814644
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattctaaga 316  Q
    |||||||||| ||||||||||||||||||| | |||||||||||| ||| | ||||||||||||||    
T  53814580 gggcattttgatcatttactttgggaatgagcgaatccatttggg-taatgagcagaattctaaga 53814644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 50663986 - 50663872
Alignment:
Q  199 gagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggcta 298  Q
    ||||||| ||| ||| |||||||||||| ||| || ||||||||   || | |||||||||||| ||||||||||||||||| | ||  |||||||| |     
T  50663986 gagatttacactagcttgagttaactcacgctacgtgagttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaatcatttggg-tg 50663888  T
Q  299 aagggcagaattctaa 314  Q
    ||| ||||||||||||    
T  50663887 aagagcagaattctaa 50663872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 53814639 - 53814578
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||| || ||||||||||||| |||||||| ||||| |||||| ||||||||||||    
T  53814639 gaattctgctcatt-acccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccct 53814578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 3540231 - 3540182
Alignment:
Q  87 tgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    |||||||||||| |||||||| |||||||||||| ||| |||||||||||    
T  3540231 tgcgtgagttaagtcacgctagtgttaaatttgcatgacttaactcacgc 3540182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 45003240 - 45003203
Alignment:
Q  77 aaaatgcccctgcgtgagttaactcacgctaatgttaa 114  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  45003240 aaaatgcccctgcgtgagttaactcacgctagtgttaa 45003203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 8150336 - 8150304
Alignment:
Q  75 ccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    |||||||||||||||||||||||||||||||||    
T  8150336 ccaaaatgcccctgcgtgagttaactcacgcta 8150304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 54528950 - 54528890
Alignment:
Q  91 tgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtc 151  Q
    |||||||| |||| ||||||||||||||| | ||||||||||||| | ||||| |||||||    
T  54528950 tgagttaattcacactaatgttaaatttgtgggagttaactcacgtttcatgacttaagtc 54528890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 7825992 - 7826042
Alignment:
Q  54 gctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacg 104  Q
    ||||||||||||   ||||||||||| ||||||||| ||||||||||||||    
T  7825992 gctcattctcaactaaaatgaccaaattgcccctgcatgagttaactcacg 7826042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 15040681 - 15040742
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||| || ||||||||||||| |||||||| ||||| |||||||  ||||||||||    
T  15040681 gaattctgctcatt-acccaaatggattcgctcattcccaaagtaaatgactgaaatgcccct 15040742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 2652489 - 2652425
Alignment:
Q  119 gcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||||| |||||||||| | | |||||||||||| |||||  || |||||||||||||||||||||    
T  2652489 gcgtgacttaactcacgttgcgtgagttaagtcatgcaaat-ttaacactagcgtgagttaactca 2652425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 15040740 - 15040680
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattct 312  Q
    ||||||||  |||||||||||||||||||| | |||||||||||| ||| | ||||||||||    
T  15040740 gggcatttcagtcatttactttgggaatgagcgaatccatttggg-taatgagcagaattct 15040680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 7665748 - 7665792
Alignment:
Q  41 cccaaatggatttgctcattctcaaagcaaatgaccaaaatgccc 85  Q
    |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  7665748 cccaaatggattcgctcattcgcaaagtaaatgaccgaaatgccc 7665792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 7665792 - 7665748
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttggg 295  Q
    |||||||| |||||||||||||| |||||| | ||||||||||||    
T  7665792 gggcatttcggtcatttactttgcgaatgagcgaatccatttggg 7665748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 30533234 - 30533294
Alignment:
Q  40 acccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaact 100  Q
    |||||||||| || |||||||| ||||| ||||| |  |||| ||||||||||||||||||    
T  30533234 acccaaatggtttcgctcattcccaaagtaaatgtcacaaatacccctgcgtgagttaact 30533294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 10378778 - 10378873
Alignment:
Q  89 cgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||| |||||||||||||  |||||||  ||||||| |||||||| | | | |||||||| ||||||| |||||||||||||||||||||||||||    
T  10378778 cgtgcgttaactcacgctggtgttaaacctgcgtgacttaactcatgatgcgtgagttaaatcacgcatagatttacactagcgtgagttaactca 10378873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 285
Target Start/End: Complemental strand, 26498381 - 26498207
Alignment:
Q  94 gttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactcatgctgagag 193  Q
    ||||||||||| || |||||||| |||||||||||||||||||     ||| |   | || || ||||||||||||||||||||||||||||||| |||     
T  26498381 gttaactcacgttagtgttaaatctgcgtgagttaactcacgca----gagat---ttacacagagatttacactagcgtgagttaactcatgctaaga- 26498290  T
Q  194 tgaatgagatttgcacaagcgtgagttaactcatgctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaa 285  Q
             ||||| | |||||||||||||| | | |||||||||||||||||||| ||||||||||||| |||   |||||||||| ||||    
T  26498289 ---------tttgcgctagcgtgagttaacttaagttgcgggagttaactcacgcaggggcattttggtctttttagttgggaatgagcaaa 26498207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 10378885 - 10378783
Alignment:
Q  79 aatgcccctgcgtgagttaactcacgctaatgttaa-atttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagt 177  Q
    ||||||||||||||||||||||||||||| ||| ||  | ||||||| |||||||||||  ||||||||||||||||| | | || |||| |||||||||    
T  10378885 aatgcccctgcgtgagttaactcacgctagtgtaaatctatgcgtgatttaactcacgcatcatgagttaagtcacgc-aggtttaacaccagcgtgagt 10378787  T
Q  178 taac 181  Q
    ||||    
T  10378786 taac 10378783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 807185 - 807129
Alignment:
Q  102 acgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaa 158  Q
    |||||| |||||||||||||||||||||||||| || | ||| ||||||||||||||    
T  807185 acgctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaa 807129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 18744779 - 18744727
Alignment:
Q  83 cccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    |||||| |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  18744779 cccctgtgtgagttaactcacactagtgttaaatttgcgtgacttaactcacg 18744727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 28050653 - 28050719
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    ||||||||||||| || ||||||||||||||||||  ||  |||||||||| ||| |||||||||||    
T  28050653 aaatgaccaaaatacctctgcgtgagttaactcacattaccgttaaatttgtgtgggttaactcacg 28050719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 14153409 - 14153349
Alignment:
Q  255 attttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattctaaga 316  Q
    |||||||||||||||||||||||||| ||||  |||||||| ||| | ||||||||||||||    
T  14153409 attttggtcatttactttgggaatgagcaaaatcatttggg-taatgagcagaattctaaga 14153349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 2559686 - 2559586
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgc 136  Q
    |||||||||| |  ||||||| ||| ||||| |||||  || | ||| ||| |||||||||||||||| || | |||||||| ||| |||||||||||||    
T  2559686 tttacccaaacgattttgctcgttcccaaagtaaatgttcatattgctcctacgtgagttaactcacgttagtattaaatttacgtaagttaactcacgc 2559587  T
Q  137 t 137  Q
    |    
T  2559586 t 2559586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 14469187 - 14469247
Alignment:
Q  69 aaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaa 129  Q
    |||| ||||||||| ||||||||| ||||||||| |||| ||| ||||||||||| |||||    
T  14469187 aaataaccaaaatgtccctgcgtgtgttaactcatgctactgtaaaatttgcgtgggttaa 14469247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 806545 - 806626
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    |||||||||||||| |||||||  | ||||||||||||||||| ||||| | ||||| | ||| |||  ||||||||||||||    
T  806545 gaattctgctcttt-acccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaactcacgcta 806626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 14153354 - 14153415
Alignment:
Q  25 gaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||| || |||||||||  ||||||||||| ||||| ||||||||||||| |||||    
T  14153354 gaattctgctcatt-acccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 14153415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 24359151 - 24359109
Alignment:
Q  145 ttaagtcacgcaaagatttacactagcgtgagttaactcatgc 187  Q
    |||| ||||| | ||||||||||||||||||||||||||||||    
T  24359151 ttaactcacgtagagatttacactagcgtgagttaactcatgc 24359109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 24359199 - 24359142
Alignment:
Q  77 aaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacg 135  Q
    ||||||||| ||| ||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  24359199 aaaatgcccttgc-tgagttaactcacactagtgttaaatctgcgtgacttaactcacg 24359142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 26498207 - 26498257
Alignment:
Q  51 tttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactc 101  Q
    ||||||||||| |||   ||| |||||||||||||||||||||||||||||    
T  26498207 tttgctcattcccaactaaaaagaccaaaatgcccctgcgtgagttaactc 26498257  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 14028201 - 14028160
Alignment:
Q  141 tgagttaagtcacgcaaagatttacactagcgtgagttaact 182  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  14028201 tgagttaagtcacgtagagattaacactagcgtgagttaact 14028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 32274243 - 32274198
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttgggc 296  Q
    |||||||| | ||||||||||||||||||| | |||||||||||||    
T  32274243 gggcatttcgatcatttactttgggaatgagcgaatccatttgggc 32274198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 7918811 - 7918843
Alignment:
Q  75 ccaaaatgcccctgcgtgagttaactcacgcta 107  Q
    |||||||||||||||||||||||||||| ||||    
T  7918811 ccaaaatgcccctgcgtgagttaactcatgcta 7918843  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 11181518 - 11181562
Alignment:
Q  88 gcgtgagttaactcacgctaatgtta-aatttgcgtgagttaact 131  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||    
T  11181518 gcgtgagttaactcacgctagtgttataatctgcgtgagttaact 11181562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 14486150 - 14486118
Alignment:
Q  81 tgcccctgcgtgagttaactcacgctaatgtta 113  Q
    ||||| |||||||||||||||||||||||||||    
T  14486150 tgcccttgcgtgagttaactcacgctaatgtta 14486118  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 31522614 - 31522539
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaact 100  Q
    |||||||||||| || |||||||||| |  |||||||| ||||| |||||||| |||||||||| ||  ||||||||    
T  31522614 tgaattctgctcatt-acccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaact 31522539  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 17115912 - 17115815
Alignment:
Q  87 tgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    ||||||||||||||| ||||| |||||||| ||||| | |||||||||||| | ||| |||| |||| |||||||||||| |||| | ||||||||||    
T  17115912 tgcgtgagttaactcgcgctagtgttaaatctgcgtaatttaactcacgctgcgtgacttaactcacacaaagatttacagtagcataagttaactca 17115815  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 38653959 - 38653893
Alignment:
Q  87 tgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcac 153  Q
    ||||||||||||||||||| ||||| || |||| |||| |||||||||||| | |||||||||||||    
T  38653959 tgcgtgagttaactcacgcaaatgtaaattttgtgtgacttaactcacgctgcgtgagttaagtcac 38653893  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 24974165 - 24974208
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttgg 294  Q
    |||||||| ||||||||||||||||||||| |||||||||||||    
T  24974165 gggcatttcggtcatttactttgggaatgagcaaatccatttgg 24974208  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 43148614 - 43148665
Alignment:
Q  87 tgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgcta 138  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||||| ||||    
T  43148614 tgcgtgagttaactcacgctagtgttaaatttgtgtgacttaactcatgcta 43148665  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 27992174 - 27992132
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttg 293  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  27992174 gggcatttcggtcatttactttgggaatgagcaaatccatttg 27992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 37999536 - 37999462
Alignment:
Q  94 gttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaagatttacact 168  Q
    |||||||||||||| ||||||||  |||||| |||| ||||||| | |||||||| ||| ||| |||||||||||    
T  37999536 gttaactcacgctagtgttaaatcagcgtgacttaattcacgctgcgtgagttaactcatgcagagatttacact 37999462  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 4787131 - 4787184
Alignment:
Q  85 cctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgcta 138  Q
    ||||| |||||||||||||| || |||||||| ||||||| |||||||||||||    
T  4787131 cctgcatgagttaactcacgttattgttaaatatgcgtgacttaactcacgcta 4787184  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 24974208 - 24974163
Alignment:
Q  42 ccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||    
T  24974208 ccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccct 24974163  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 7281367 - 7281323
Alignment:
Q  143 agttaagtcacgcaaagatttacactagcgtgagttaactcatgc 187  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||    
T  7281367 agttaaatcacgcatagattaacactagcgtgagttaactcatgc 7281323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 19487608 - 19487536
Alignment:
Q  85 cctgcgtgagttaactcacgctaatgttaaattt-gcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    |||||||||||||||||||||  ||||| | ||| || |||||||||||||||  | ||||||||||||||||    
T  19487608 cctgcgtgagttaactcacgcagatgtttattttagcatgagttaactcacgcagcgtgagttaagtcacgca 19487536  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 27992132 - 27992176
Alignment:
Q  43 caaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  27992132 caaatggatttgctcattcccaaagtaaatgaccgaaatgcccct 27992176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 26252986 - 26253025
Alignment:
Q  145 ttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  26252986 ttaattcacgcagagatttacactagcgtgagttaactca 26253025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 33164584 - 33164522
Alignment:
Q  24 tgaattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    |||||||||||| || |||||||||| |  |||||||||||||| ||||| |||||||||||||    
T  33164584 tgaattctgctcatt-acccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccct 33164522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 35314017 - 35313982
Alignment:
Q  213 cgtgagttaactcatgctgcgggagttaactcacgc 248  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35314017 cgtgagttaactcatgctgcgtgagttaactcacgc 35313982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 54208191 - 54208286
Alignment:
Q  37 tttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactc 132  Q
    |||| |||||||| ||||||||||| ||||| |||||| |||||| ||||| |   |||||||| ||| || |||| ||||| ||||| |||||||    
T  54208191 tttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacgttagtgttgaatttacgtgacttaactc 54208286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 14619974 - 14619936
Alignment:
Q  118 tgcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  14619974 tgcgtgagttaactcacgcaacatgagttaattcacgca 14619936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 35313954 - 35313996
Alignment:
Q  142 gagttaagtcacgcaaagatttacactagcgtgagttaactca 184  Q
    ||||||| ||||| | |||||||||||||||||||||||||||    
T  35313954 gagttaactcacgtagagatttacactagcgtgagttaactca 35313996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 24001542 - 24001595
Alignment:
Q  337 gttttgtaaggttgagtgaaacccaacctaaattctaatatgatatcagagtct 390  Q
    ||||||||||||||||| || ||||||| ||||||||| ||  |||||||||||    
T  24001542 gttttgtaaggttgagttaagcccaacccaaattctaagatagtatcagagtct 24001595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 23242564 - 23242520
Alignment:
Q  141 tgagttaagtcacgcaaagatttacactagcgtgagttaactcat 185  Q
    |||||||| ||||| | ||||||||||| ||||||||||||||||    
T  23242564 tgagttaactcacgtagagatttacactggcgtgagttaactcat 23242520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 36217929 - 36217866
Alignment:
Q  251 gggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaattctaag 315  Q
    ||||||||||| | ||||||||||||||||  ||| ||||||| | ||||| |||||||||||||    
T  36217929 gggcattttggacttttactttgggaatgagtaaaaccatttgag-taaagagcagaattctaag 36217866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 49261887 - 49261927
Alignment:
Q  212 gcgtgagttaactcatgctgcgggagttaactcacgcatgg 252  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  49261887 gcgtgagttaagtcatgctgcgtgacttaactcacgcatgg 49261927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 269110 - 269188
Alignment:
Q  26 aattctgctcttttacccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaactcacgc 105  Q
    ||||||||||||| ||||||| |  ||||||||||| |||   ||||||||||||||||||||||||| |||||||||||    
T  269110 aattctgctcttt-acccaaaagtttttgctcattcccaagtgaaatgaccaaaatgcccctgcgtgacttaactcacgc 269188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 197403 - 197441
Alignment:
Q  118 tgcgtgagttaactcacgctacatgagttaagtcacgca 156  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  197403 tgcgtgagttaactcacgcaacatgagttaattcacgca 197441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 269191 - 269110
Alignment:
Q  228 gctgcgggagttaactcacgcatgggcattttggtcatttactttgggaatgaacaaatccatttgggctaaagggcagaatt 310  Q
    |||||| ||||||| ||||||| |||||||||||||||||   |||||||||| ||||  | |||||| ||||| ||||||||    
T  269191 gctgcgtgagttaagtcacgcaggggcattttggtcatttcacttgggaatgagcaaaaacttttggg-taaagagcagaatt 269110  T

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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 4589 - 4650
Alignment:
Q  73 gaccaaaatgcccctgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcac 134  Q
    ||||||||||| ||||| |||||||||| |||||  ||||||||||||||||||||| ||||    
T  4589 gaccaaaatgctcctgcatgagttaactaacgctggtgttaaatttgcgtgagttaagtcac 4650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 46599 - 46657
Alignment:
Q  42 ccaaatggatttgctcattctcaaagcaaatgaccaaaatgcccctgcgtgagttaact 100  Q
    ||||| || |||||||||| | |||| |||| |||||||| ||||||||||||||||||    
T  46599 ccaaacggttttgctcattattaaagtaaataaccaaaatacccctgcgtgagttaact 46657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 35801 - 35837
Alignment:
Q  51 tttgctcattctcaaagcaaatgaccaaaatgcccct 87  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  35801 tttgctcattctcaaagtaaatgtccaaaatgcccct 35837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 36218 - 36286
Alignment:
Q  90 gtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacatgagttaagtcacgcaaa 158  Q
    ||||||||||||| ||   ||||||  | ||||||||||| ||||||||  ||||||||||||||||||    
T  36218 gtgagttaactcaagcatgtgttaacctggcgtgagttaagtcacgctatgtgagttaagtcacgcaaa 36286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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