View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_low_14 (Length: 353)
Name: NF12957_low_14
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 34 - 353
Target Start/End: Complemental strand, 30850674 - 30850352
Alignment:
| Q |
34 |
tatcataaagaaatgtgatccattcatgaagtgggctccaacaataggaaattagctccacaaaaacaagggcaactaatgtgtcactatattgattacc |
133 |
Q |
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| T |
30850674 |
tatcataaagaaatgtgatccattcatgaagtgggttccaacaataggaaattagctccacaaaaacaacggcaac-aatgtgtcactatattgattacc |
30850576 |
T |
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| Q |
134 |
ctaattaacggccaaaatgtaatccattattgattaatttctctatgatgtgggtcacaaaacagaccaggttccaaacttccaatgactttagtatcca |
233 |
Q |
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| T |
30850575 |
ctaattaacggccaaaatgaaatccattattgattaatttctctatgatgtgggtcacaaaacagaccaggttccaaacttccaatgactttagtatcca |
30850476 |
T |
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| Q |
234 |
accaaacctaccatgttccactttctccccacatcacacaactatcaatttca----ttcaatcaccaatgttaacatcatcttctatcatgatttcgcc |
329 |
Q |
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| T |
30850475 |
accaaacctaccatgttccactttctccccacatcacacaaccatcaatttcattcattcaatcaccaatgttaacatcatcttctattatgatttcgcc |
30850376 |
T |
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| Q |
330 |
acattatactctaatcagtgcact |
353 |
Q |
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| T |
30850375 |
accttatactctaatcagtgcact |
30850352 |
T |
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