View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_low_17 (Length: 244)
Name: NF12957_low_17
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1905868 - 1905642
Alignment:
| Q |
1 |
acaaggccatttttgccattaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaaaagaa |
100 |
Q |
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| T |
1905868 |
acaaggccatttttgccattaccctattgcaccaagaagcacacttttacatattatagagaaactgagaggaggaacaactcttgatctgcaaaaagaa |
1905769 |
T |
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| Q |
101 |
aaacataaggaaattaataaagggaagcataaagtgtagcttttgttgaaatcaagcgaagacaaggtgaatttgacaaaatcgtggcagcaccgtgttg |
200 |
Q |
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| T |
1905768 |
aaacataaggaaattaataaacggaagcataaagtgtagcttttgttgaaatcaagcgaagacacggtgaatttgacaaaatcgtggaagcaccgtgttg |
1905669 |
T |
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| Q |
201 |
ccaaaatcttcgcaacatgcgtgattt |
227 |
Q |
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| T |
1905668 |
ccaaaatcttcgcaacatgcgtgattt |
1905642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 1878434 - 1878348
Alignment:
| Q |
11 |
ttttgccattaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaaaa |
97 |
Q |
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| T |
1878434 |
ttttgccattaccctatcgccccaagaagcacaattttgcataatatggaaaaactgagtggaggaaccactcttgatctgcaaaaa |
1878348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 1896011 - 1895919
Alignment:
| Q |
3 |
aaggccatttttgccattaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaa |
95 |
Q |
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| T |
1896011 |
aaggccatttttggcattaccctattgcaccaagaagtacaattttgcatactatggagaaactgagtggagaaaccactattgacctgcaaa |
1895919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 1911493 - 1911403
Alignment:
| Q |
19 |
ttaccctattgcaccaagaagcacacttttacatattatagaaaaactga---gaggaggaacaactcttgatctgcaaaaagaaaaacat |
106 |
Q |
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| T |
1911493 |
ttaccctattgccccaagaagcacacttttgcatataatggagaaactgattggaggaggaacagctcttgatctgcaaaaataaatacat |
1911403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 1884432 - 1884353
Alignment:
| Q |
18 |
attaccctattgcaccaagaagcacacttttacatattatagaaaaactgagaggaggaacaactcttgatctgcaaaaa |
97 |
Q |
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| T |
1884432 |
attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtggatgaaccactcttgatctgcaaaaa |
1884353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 1891224 - 1891187
Alignment:
| Q |
11 |
ttttgccattaccctattgcaccaagaagcacactttt |
48 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
1891224 |
ttttggcattaccctattgctccaagaagcacactttt |
1891187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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