View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_low_2 (Length: 810)
Name: NF12957_low_2
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 54 - 523
Target Start/End: Complemental strand, 28536849 - 28536380
Alignment:
| Q |
54 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatataggaatttggtttgaatattcatatggaatttcaaag |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28536849 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatacaggaatttggtttgaatattcatatggaatttcaaag |
28536750 |
T |
|
| Q |
154 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatcgagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
253 |
Q |
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| T |
28536749 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatccagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
28536650 |
T |
|
| Q |
254 |
tttatttgacaagcttgaatatgtttcattgtgttgaggagaatgaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgctttct |
353 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28536649 |
tttatttgacaagcttgaatatgttttattgtgttgaggagaatgaaagtactatatgacatctacaaactttttgtgtcgttcttccttcttgcgttct |
28536550 |
T |
|
| Q |
354 |
tcgcacgctcaacctcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactg |
453 |
Q |
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| T |
28536549 |
tcgcacgctcaacgtcagccgtttcatctatcaaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactg |
28536450 |
T |
|
| Q |
454 |
atgaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
523 |
Q |
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| T |
28536449 |
atgaaatgaattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattcatgaat |
28536380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 523 - 783
Target Start/End: Complemental strand, 28536317 - 28536057
Alignment:
| Q |
523 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
622 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
28536218 |
T |
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| Q |
623 |
tgttcggttagtagtctagcatgtatttgcaaggtagctgcctggtctagtacagatgttcaatatatactctctgttaagtcctagacattgtttggat |
722 |
Q |
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| T |
28536217 |
tgttcggttagtagtctaacatgtatttgcaaggtagctgcctggtctagtacagctgttcaatatatactctctgttaagtcctagacattgtttggat |
28536118 |
T |
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| Q |
723 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
783 |
Q |
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| T |
28536117 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
28536057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 28536941 - 28536833
Alignment:
| Q |
12 |
gaacctgtgataatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
28536941 |
gaacctgtgataatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattctgttttcaccttttattttttcatcaatgattaa |
28536842 |
T |
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| Q |
112 |
tatatagga |
120 |
Q |
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|||| |||| |
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| T |
28536841 |
tatacagga |
28536833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 54492156 - 54492190
Alignment:
| Q |
468 |
ctcatgtgtaatttacacatgagaaggtaaagtgt |
502 |
Q |
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| T |
54492156 |
ctcatgtgtaattttcacatgagaaggtaaagtgt |
54492190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 17429155 - 17429217
Alignment:
| Q |
456 |
gaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
518 |
Q |
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||||||||||| |||||||||||||||| ||||||| |||||||| |||| | |||||||| |
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| T |
17429155 |
gaaatggattctctcatgtgtaatttactcatgagatactaaagtgtgatctcttaccattca |
17429217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 42971534 - 42971584
Alignment:
| Q |
468 |
ctcatgtgtaatttacacatgaga-aggtaaagtgtcatctttcaccattc |
517 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
42971534 |
ctcatgtgtaatttttacatgagagaggtaaagtgtcatctctcaccattc |
42971584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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