View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12957_low_4 (Length: 621)

Name: NF12957_low_4
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12957_low_4
NF12957_low_4
[»] chr6 (1 HSPs)
chr6 (20-616)||(4281145-4281731)
[»] chr3 (5 HSPs)
chr3 (122-616)||(17594762-17595257)
chr3 (317-422)||(26902954-26903054)
chr3 (32-122)||(19807219-19807310)
chr3 (555-611)||(26902896-26902952)
chr3 (309-348)||(12208097-12208136)
[»] chr8 (5 HSPs)
chr8 (20-420)||(31710156-31710557)
chr8 (20-210)||(14674526-14674717)
chr8 (117-211)||(20133873-20133967)
chr8 (32-122)||(18974375-18974466)
chr8 (159-222)||(17535285-17535348)
[»] scaffold0130 (1 HSPs)
scaffold0130 (248-616)||(17003-17369)
[»] chr4 (2 HSPs)
chr4 (291-618)||(12325905-12326227)
chr4 (62-211)||(12325739-12325891)
[»] chr2 (1 HSPs)
chr2 (49-307)||(8165820-8166086)
[»] chr5 (1 HSPs)
chr5 (72-341)||(11203450-11203710)
[»] chr1 (1 HSPs)
chr1 (353-498)||(20196581-20196726)
[»] scaffold0076 (1 HSPs)
scaffold0076 (62-211)||(47845-47997)
[»] chr7 (2 HSPs)
chr7 (117-211)||(44358104-44358198)
chr7 (41-122)||(5331406-5331487)
[»] scaffold0208 (1 HSPs)
scaffold0208 (159-199)||(343-383)


Alignment Details
Target: chr6 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 616
Target Start/End: Complemental strand, 4281731 - 4281145
Alignment:
Q  20 tgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281731 tgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatac 4281632  T
Q  120 tacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281631 tacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatg 4281532  T
Q  220 aagtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgaccgacagtggaggtcaatttgtcaccatcatagtcatccttattaacag 319  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4281531 aagtgtagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggaggtcaattcgtcaccatcatagtcatccttattaacag 4281432  T
Q  320 gcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaatgacaa 419  Q
    | ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4281431 gtggatatcatatacaatcatatcacgagaaaggagctcggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaacgacaa 4281332  T
Q  420 ggttctatattctcgatcttttatgtatagggctgatatatgtcttcaaatacttccaaagtaattagtaacaactcaggacttcataatttgtctttaa 519  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4281331 ggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattagtaacaactcaggacttcataatttgtctttaa 4281232  T
Q  520 tcgatattatatatcttccgactatttttctggcgcatatgtgcatattaaagaaaaccatccaggttccatatttcctcaattaattcatatcact 616  Q
              ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  4281231 ----------atatcttccaactatttttctggcgcatatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcact 4281145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 122 - 616
Target Start/End: Original strand, 17594762 - 17595257
Alignment:
Q  122 cagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatgaa 221  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17594762 cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaa 17594861  T
Q  222 gtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgaccgacagtggaggtcaatttgtcaccatcatagtcatccttattaacaggc 321  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||    
T  17594862 gtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtcaccatcatagtcatccttgtgaacaggc 17594961  T
Q  322 ggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaatgacaagg 421  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  17594962 ggatatcatatacaatcatgtcacgagaaaggaacctgaataaatgctcaaagcagcaaggaccgaagcggcatcattcaaaagaaaattaacgacaagg 17595061  T
Q  422 ttctatattctcgatcttttatgtatagggctgatatatgtcttcaaatacttccaaagtaattagtaacaactcaggacttcataatttgtctttaatc 521  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  17595062 ttctatattcttgatcttttatgtatagggctgatatatgt-ttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatc 17595160  T
Q  522 gatat--tatatatcttccgactatttttctggcgcatatgtgcatattaaagaaaaccatccaggttccatatttcctcaattaattcatatcact 616  Q
     ||||  |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  17595161 aatattatatatatcttccaactatttttgtggcgcataggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcact 17595257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 26903054 - 26902954
Alignment:
Q  317 caggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaatga 416  Q
    |||||||||||||||||||||||||     || || |||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  26903054 caggcggatatcatatacaatcatg-----aggaatgaacccggataaatgctcaaagcagcgaggaccgaagcggcaccattcaaaagaaaattaatga 26902960  T
Q  417 caaggt 422  Q
    ||||||    
T  26902959 caaggt 26902954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 19807310 - 19807219
Alignment:
Q  32 ggcttatagtttttt-ggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac 122  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  19807310 ggcttatagtttttttggaaataatctagtatgataatggatattttggagacaataggttggactttcatccttgattctattactactac 19807219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 555 - 611
Target Start/End: Complemental strand, 26902952 - 26902896
Alignment:
Q  555 catatgtgcatattaaagaaaaccatccaggttccatatttcctcaattaattcata 611  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  26902952 catatatgcatattaaagaaaaccatccagattctatatttcctcaattaatacata 26902896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 12208097 - 12208136
Alignment:
Q  309 cttattaacaggcggatatcatatacaatcatgtcacgag 348  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12208097 cttatgaacaggcggatatcatatacaatcatgtcacgag 12208136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 31710156 - 31710557
Alignment:
Q  20 tgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaata 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31710156 tgtgctgcaattggcttatagtttttttggcaataatctagtatgataattgatattttggagacaataggttggaccttcatccctgatttcattaata 31710255  T
Q  119 ctacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaat 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31710256 ctacagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagctcggttatcggtaaat 31710355  T
Q  219 gaagtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgaccgacagtggaggtcaatttgtcaccatcatagtcatccttattaaca 318  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  31710356 gaagtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtcaccatcatagtcatccttatgaaca 31710455  T
Q  319 ggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaatgaca 418  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  31710456 ggcggatatcatatacaatcatgtcacaagaaaggaacccggataaatgctcaaagcagcaaggatcgaagcggcatcattcaaaagaaaattaacgaca 31710555  T
Q  419 ag 420  Q
    ||    
T  31710556 ag 31710557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 14674526 - 14674717
Alignment:
Q  20 tgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaata 118  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14674526 tgtgctgcaattggcttatagtttttttggcaatagtctagtatgataattgatattttggagacaataggttggacattcatccctgatttcattaata 14674625  T
Q  119 ctacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttat 210  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||    
T  14674626 ctacagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttat 14674717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 20133967 - 20133873
Alignment:
Q  117 tactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 211  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| || ||||| ||||||||||    
T  20133967 tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc 20133873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 18974375 - 18974466
Alignment:
Q  32 ggcttatagtttttt-ggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac 122  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  18974375 ggcttatagtttttttggaaataatctagtatgataatggatattttggagacaataggttggactttcatccttgattctattactactac 18974466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 17535348 - 17535285
Alignment:
Q  159 cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatgaag 222  Q
    |||||||||||||| ||| | ||||||||||||||||||||  || ||||||| || |||||||    
T  17535348 cctcaagattcaactaacaagctcaatttctcatctccatcgtcctggttatcagtgaatgaag 17535285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 248 - 616
Target Start/End: Complemental strand, 17369 - 17003
Alignment:
Q  248 ccaacaacgtcacgaagatccgaccgacagtggaggtcaatttgtcaccatcatagtcatccttattaacaggcggatatcatatacaatcatgtcacga 347  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  17369 ccaacgacgtcacgaagatacgaccgacagtggagttcaattcgtcaccatcatagtcatccttatgaacaggcggatataatatacaatcatgtcacga 17270  T
Q  348 gaaaggaacccggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaatgacaaggttctatattctcgatcttttatgtat 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||  |    
T  17269 gaaaggaacccggataaatgctcaaagcagcaaggaccgaagcggcgtcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatg--t 17172  T
Q  448 agggctgatatatgtcttcaaatacttccaaagtaattagtaacaactcaggacttcataatttgtctttaatcgatattatatatcttccgactatttt 547  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  17171 agggctgatatatgtcttcaaatacttcaaaagtaattagtgacaactcaggacttcataatttgtctttaatcgatattatatatcttccaattatttt 17072  T
Q  548 tctggcgcatatgtgcatattaaagaaaaccatccaggttccatatttcctcaattaattcatatcact 616  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  17071 tctgacgcatatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcact 17003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 291 - 618
Target Start/End: Original strand, 12325905 - 12326227
Alignment:
Q  291 gtcaccatcatagtcatccttattaacaggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggaccgaggc 390  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||||     || || |||||||||||||||||||||||||| |||||||| ||    
T  12325905 gtcaccatcatagtcctccttatgaacaggcagatatcatatacaatcatg-----aggaatgaacccggataaatgctcaaagcagcgaggaccgaagc 12325999  T
Q  391 ggcatcattcaaaagaaaattaatgacaaggttctatattctcgatcttttatgtatagggctgatatatgtcttcaaatacttccaaagtaattagtaa 490  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  12326000 ggcaccattcaaaagaaaattaatgacaaggttctatattcctgatcttttatgtatagggctgatatatgtcttcaaacatttcaaaagtaattagtaa 12326099  T
Q  491 caactcaggacttcataatttgtctttaatcgatattatatatcttccgactatttttctggcgcatatgtgcatattaaagaaaaccatccaggttcca 590  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||| |    
T  12326100 caactcaggacttcatattttatctttaatcgatatcatatatcttccaactatttttctggtacatatatgcatattaaagaaaaccatccaggttcta 12326199  T
Q  591 tatttcctcaattaattcatatcactcg 618  Q
    ||||||||||||||||||||| ||||||    
T  12326200 tatttcctcaattaattcatagcactcg 12326227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 12325739 - 12325891
Alignment:
Q  62 tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg 158  Q
    |||||||  ||||| |||||||||||| |||||| ||||||| |||||   | | || ||||||||||||||| |||||||||||| |||||||||||||    
T  12325739 tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg 12325838  T
Q  159 cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 211  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  12325839 cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc 12325891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 49 - 307
Target Start/End: Original strand, 8165820 - 8166086
Alignment:
Q  49 caataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactacagcaagggtgttgtacttcctacgta 148  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||   |||| |||||| |||||| |||    
T  8165820 caataatctagtatgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccaca---agggcgttgtatttcctaagta 8165916  T
Q  149 attttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaa-----------tgaagtggagtgtgtggctt 237  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||| || ||||||||||||||||            |||||||| |||| |||||    
T  8165917 attttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatcggtaaaggaagtggaatggaagtggaatgtgcggctt 8166016  T
Q  238 tctctcaacaccaacaacgtcacgaagatccgaccgacagtggaggtcaatttgtcaccatcatagtcat 307  Q
    ||||||||||||||| |||||||||||||| || |||||||||||  ||||| |||||||||||||||||    
T  8166017 tctctcaacaccaacgacgtcacgaagatctgatcgacagtggagcccaattcgtcaccatcatagtcat 8166086  T

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Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 72 - 341
Target Start/End: Original strand, 11203450 - 11203710
Alignment:
Q  72 tattttggagacaataggttggaccttcatccctgatttcattaatactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaa 171  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  11203450 tattctggagacaatagattggactttcatccttgatttcattactactacagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaa 11203549  T
Q  172 caaacgaactcaatttctcatctccatcagcccggttatcggtaaatgaagtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgac 271  Q
    |||| |||||||| |||||  || ||||| ||||||||||     ||  |||| | ||| ||||||||||||||| ||||| |||||   ||||||| |     
T  11203550 caaatgaactcaacttctcccctacatcaacccggttatc-----at-cagtgaaatgtatggctttctctcaacgccaacgacgtc---aagatccaat 11203640  T
Q  272 cgacagtggaggtcaatttgtcaccatcatagtcatccttattaacaggcggatatcatatacaatcatg 341  Q
    | |||| |||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  11203641 caacagaggagctcaattcgtcaccatcatagtcttccttataaacaggcggatatcatatacaatcatg 11203710  T

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Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 353 - 498
Target Start/End: Original strand, 20196581 - 20196726
Alignment:
Q  353 gaacccggataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaatgacaaggttctatattctcgatcttttatgtatagggc 452  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||    
T  20196581 gaacacggataaatgctcaaagcagcgaggaccgaagcggcatcattcaaaagaaaattaatgacaaggttctatattcttgatctttaacgtatagggc 20196680  T
Q  453 tgatatatgtcttcaaatacttccaaagtaattagtaacaactcag 498  Q
    | | ||||||||||||| | ||| || ||||||||| |||||||||    
T  20196681 ttaaatatgtcttcaaacatttcaaatgtaattagtgacaactcag 20196726  T

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Target: scaffold0076 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 47845 - 47997
Alignment:
Q  62 tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg 158  Q
    |||||||  ||||| |||||||||||| |||||| ||||||| |||||   | | || |||||||||||| || |||||||||||| |||||||||||||    
T  47845 tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcaggg 47944  T
Q  159 cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 211  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  47945 cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc 47997  T

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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 44358104 - 44358198
Alignment:
Q  117 tactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 211  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| || ||||| ||||||||||    
T  44358104 tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc 44358198  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 5331487 - 5331406
Alignment:
Q  41 ttttttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac 122  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  5331487 ttttttggaaataatctagtatgataagggatattttggagacaataggttggactttcatccttgattctattactactac 5331406  T

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Target: scaffold0208 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 383 - 343
Alignment:
Q  159 cctcaagattcaacaaacgaactcaatttctcatctccatc 199  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  383 cctcaagattcaacaaacaaactcaatttctcatctccatc 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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