View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_low_5 (Length: 570)
Name: NF12957_low_5
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 19577632 - 19578167
Alignment:
| Q |
18 |
caatcaccaatattgtatcacatcacacgctcttcacaaataatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaacacct |
117 |
Q |
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| T |
19577632 |
caatcaccaatattgtatcacatcacacgctcttcacaaataatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaactcct |
19577731 |
T |
|
| Q |
118 |
ccaccacaagaggccataggcggcgtcacacaccagccttccgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577732 |
ccaccacaagaggccataggcggcgtcacacaccagcctttcgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaa |
19577831 |
T |
|
| Q |
218 |
ccctctcaaaaacatccttactcggaaacttccttccaacaggaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcac |
317 |
Q |
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| T |
19577832 |
ccctctcaaaaacatccttactcggaaacttccttccaacaggaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcac |
19577931 |
T |
|
| Q |
318 |
tcatgttcataccatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19577932 |
tcatgttcataccatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgacagttttcacggcgcggatggtaac |
19578031 |
T |
|
| Q |
418 |
gtttactatggttttgctactcggaacgggttgtcggtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaag |
517 |
Q |
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| T |
19578032 |
gtttactatggttttgctactcggaacgggttgtctgtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaag |
19578131 |
T |
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| Q |
518 |
atttcgtgcatgcggttatgtcggttatggtgtttg |
553 |
Q |
| |
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| T |
19578132 |
atttcgtgcatgcggttatgtcggttatggtgtttg |
19578167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 59 - 553
Target Start/End: Complemental strand, 2787921 - 2787427
Alignment:
| Q |
59 |
aatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaacacctccaccacaagaggccataggcggcgtcacacaccagccttc |
158 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||||||| | ||| || | ||| || || |||||||| |
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| T |
2787921 |
aatcaaatatggaacaaacacaacaagaaattggaatcaaaatctacaatacaacaccgccaccacaagaagtcatgggggccgtaacgcagcagccttc |
2787822 |
T |
|
| Q |
159 |
cgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatccttactcggaaacttccttccaaca |
258 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||||| ||||| || ||||||||||| |||||||| |||||||| || |||||||||||| || |
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| T |
2787821 |
tgatccaccggaacatggcaagaagcgtcgtgccataatggcgaaaggcgtgcaaaaaaccctttcaaaaacttccttacttggtaacttccttccatca |
2787722 |
T |
|
| Q |
259 |
ggaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatgatccatttcctcttaatcatgt |
358 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||| | || || ||||| ||||| || || |||||||||||||||||||| ||||| || | |
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| T |
2787721 |
ggaacactcctcacattcgaaatggtccttccttcgatctataggaacggccaatgtactcacgtacacaccatcatgatccatttccttttaattatat |
2787622 |
T |
|
| Q |
359 |
gtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttactatggttttgctactcggaacgggttgtcggtttt |
458 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||| | ||| ||||| || ||||| |
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| T |
2787621 |
gtgcactctcttgtttcttttttcactttacagatagttttcacggcgctgatggtaatgtttactatggttttgttaccccgaaagggttatccgtttt |
2787522 |
T |
|
| Q |
459 |
taaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatgtcggttatggtgtttg |
553 |
Q |
| |
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|||||| ||||| |||||||||||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||| ||||||||||||| |
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| T |
2787521 |
taaaccaggacttgctgttttggttcctaacgacgacaaatacaaggtagggtttcaagattttgttcatgcagttatgtcagttatggtgtttg |
2787427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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