View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12957_low_6 (Length: 547)
Name: NF12957_low_6
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12957_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Original strand, 19577652 - 19578167
Alignment:
| Q |
15 |
catcacacgctcttcacaaataatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaacacctccaccacaagaggccatagg |
114 |
Q |
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| T |
19577652 |
catcacacgctcttcacaaataatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaactcctccaccacaagaggccatagg |
19577751 |
T |
|
| Q |
115 |
cggcgtcacacaccagccttccgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatcctta |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577752 |
cggcgtcacacaccagcctttcgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatcctta |
19577851 |
T |
|
| Q |
215 |
ctcggaaacttccttccaacaggaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatga |
314 |
Q |
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| T |
19577852 |
ctcggaaacttccttccaacaggaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatga |
19577951 |
T |
|
| Q |
315 |
tccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttactatggttttgctac |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577952 |
tccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgacagttttcacggcgcggatggtaacgtttactatggttttgctac |
19578051 |
T |
|
| Q |
415 |
tcggaacgggttgtcggtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatg |
514 |
Q |
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| T |
19578052 |
tcggaacgggttgtctgtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatg |
19578151 |
T |
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| Q |
515 |
tcggttatggtgtttg |
530 |
Q |
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| T |
19578152 |
tcggttatggtgtttg |
19578167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 36 - 530
Target Start/End: Complemental strand, 2787921 - 2787427
Alignment:
| Q |
36 |
aatcaaatatggaacaaactcaacaagaaattgggatcaaagtctacaatgcaacacctccaccacaagaggccataggcggcgtcacacaccagccttc |
135 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||||||| | ||| || | ||| || || |||||||| |
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| T |
2787921 |
aatcaaatatggaacaaacacaacaagaaattggaatcaaaatctacaatacaacaccgccaccacaagaagtcatgggggccgtaacgcagcagccttc |
2787822 |
T |
|
| Q |
136 |
cgatccaccggaacctggcaagaaacgtcgcgccataatggcaaaaggtgtccaaaaaaccctctcaaaaacatccttactcggaaacttccttccaaca |
235 |
Q |
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| T |
2787821 |
tgatccaccggaacatggcaagaagcgtcgtgccataatggcgaaaggcgtgcaaaaaaccctttcaaaaacttccttacttggtaacttccttccatca |
2787722 |
T |
|
| Q |
236 |
ggaacactcataacattcgaaatggtccttccttcaatctaccgaaatggtcaatgcactcatgttcataccatcatgatccatttcctcttaatcatgt |
335 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||| | || || ||||| ||||| || || |||||||||||||||||||| ||||| || | |
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| T |
2787721 |
ggaacactcctcacattcgaaatggtccttccttcgatctataggaacggccaatgtactcacgtacacaccatcatgatccatttccttttaattatat |
2787622 |
T |
|
| Q |
336 |
gtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttactatggttttgctactcggaacgggttgtcggtttt |
435 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||| | ||| ||||| || ||||| |
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| T |
2787621 |
gtgcactctcttgtttcttttttcactttacagatagttttcacggcgctgatggtaatgtttactatggttttgttaccccgaaagggttatccgtttt |
2787522 |
T |
|
| Q |
436 |
taaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatgtcggttatggtgtttg |
530 |
Q |
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|||||| ||||| |||||||||||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||| ||||||||||||| |
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| T |
2787521 |
taaaccaggacttgctgttttggttcctaacgacgacaaatacaaggtagggtttcaagattttgttcatgcagttatgtcagttatggtgtttg |
2787427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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