View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12957_low_8 (Length: 513)

Name: NF12957_low_8
Description: NF12957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12957_low_8
NF12957_low_8
[»] chr1 (3 HSPs)
chr1 (282-453)||(26920797-26920994)
chr1 (1-93)||(26920509-26920601)
chr1 (145-220)||(26920659-26920734)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 282 - 453
Target Start/End: Original strand, 26920797 - 26920994
Alignment:
Q  282 tacagaaattgggattacattacatagaaaatgatgttgtt---------ggtgttaaggggagacaatagagaaaggtatataatagagaaaa------ 366  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||          
T  26920797 tacagaaattgggattacattacatagaaaatgatgttgtttgttttgttggtgttaaggggagacattagagaaaggtatataatagagaaaaaagggt 26920896  T
Q  367 -----------aagggtataatattgattgtgtatgtgatattttctgaagcaactggttttgtgagtggtgagagaaaaactgcccatggtatttgg 453  Q
               |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26920897 aaagagaaaaaaagggtataatattgattgtgtatatgatattttctgaagcaactggttttgtgagtggtgagagaaaaactgcccatggtatttgg 26920994  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26920509 - 26920601
Alignment:
Q  1 tgtttcattgaatgatgatgatgttgatttgtgtcagtgtcatgatgttggggagcataggaaacaacttgggaatggtgcaattgatgagga 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26920509 tgtttcattgaatgatgatgatgttgatttgtgtcagtgtcatgatgttggggagcataggaaacaacttgggaatggtgcaattgatgagga 26920601  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 26920659 - 26920734
Alignment:
Q  145 aaagggatattatcaactactcctaacaaaccagaaggagtgatggtggaaaacatggcattagcttccatcattc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26920659 aaagggatattatcaactactcctaacaaaccagaaggagtgatggtggaaaacatggcattagcttccatcattc 26920734  T

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