View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12958_high_9 (Length: 253)

Name: NF12958_high_9
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12958_high_9
NF12958_high_9
[»] chr4 (4 HSPs)
chr4 (153-253)||(50111384-50111484)
chr4 (153-253)||(50112859-50112959)
chr4 (190-253)||(23669911-23669974)
chr4 (214-253)||(50111277-50111316)
[»] chr3 (2 HSPs)
chr3 (20-105)||(32772517-32772602)
chr3 (136-250)||(32772804-32772917)
[»] chr2 (2 HSPs)
chr2 (157-253)||(21502896-21502988)
chr2 (189-253)||(21503060-21503124)
[»] scaffold0015 (5 HSPs)
scaffold0015 (189-253)||(207922-207986)
scaffold0015 (189-253)||(208348-208412)
scaffold0015 (163-253)||(208064-208150)
scaffold0015 (163-253)||(208228-208314)
scaffold0015 (189-253)||(208512-208576)
[»] chr8 (10 HSPs)
chr8 (189-253)||(21961751-21961815)
chr8 (152-253)||(22011997-22012094)
chr8 (189-253)||(22013371-22013435)
chr8 (189-253)||(21961325-21961389)
chr8 (163-253)||(21961423-21961509)
chr8 (163-253)||(21961587-21961673)
chr8 (189-253)||(21961161-21961225)
chr8 (190-253)||(19735339-19735402)
chr8 (197-253)||(21960833-21960889)
chr8 (197-253)||(21960997-21961053)
[»] chr1 (2 HSPs)
chr1 (189-253)||(52071044-52071108)
chr1 (189-242)||(2363421-2363474)
[»] chr5 (1 HSPs)
chr5 (153-253)||(17424505-17424601)
[»] scaffold0314 (2 HSPs)
scaffold0314 (189-253)||(19704-19768)
scaffold0314 (152-234)||(19462-19540)
[»] chr6 (9 HSPs)
chr6 (152-242)||(29907856-29907942)
chr6 (152-240)||(29906410-29906494)
chr6 (152-240)||(30117886-30117970)
chr6 (189-242)||(29906110-29906163)
chr6 (152-242)||(29906244-29906330)
chr6 (189-242)||(29907721-29907774)
chr6 (152-242)||(30118050-30118136)
chr6 (189-242)||(30118217-30118270)
chr6 (190-242)||(30120886-30120938)
[»] scaffold0168 (1 HSPs)
scaffold0168 (194-235)||(10022-10063)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 50111384 - 50111484
Alignment:
Q  153 ttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaa 252  Q
    |||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50111384 ttcgtctttcaggatgaaaactcgatataaacattcattattttagtcaatttacttgttcatttgatctataatcatcatactttaactatcagactaa 50111483  T
Q  253 t 253  Q
    |    
T  50111484 t 50111484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 50112859 - 50112959
Alignment:
Q  153 ttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaa 252  Q
    |||||||| ||||||||||| | ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  50112859 ttcgtcttccaggatgaaaactcgatataaacattcattattttagtcaatttacttgttcatttaatctataatcatcatactttgacgatcagactaa 50112958  T
Q  253 t 253  Q
    |    
T  50112959 t 50112959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 23669974 - 23669911
Alignment:
Q  190 ttattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||  |||| ||||||||| ||||| ||||||||||||||||| | ||||| ||||||||    
T  23669974 ttattttgttcaagttacttgtttatttgctctataatcatcatactattactattagactaat 23669911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 50111277 - 50111316
Alignment:
Q  214 atttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  50111277 atttgatctataatcattatactttgactatcaaactaat 50111316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 32772517 - 32772602
Alignment:
Q  20 taaaagaggaaagaaattgttgtaaataatagtgtaaatagtaatgtagttttaaattcaattttttaaaaagttgattttgtaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  32772517 taaaagaggaaagaaattgttgtaaataatagtgtaaatagtaatgtagttttaaattcaatttttttaaaggttgattttataaa 32772602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 32772804 - 32772917
Alignment:
Q  136 gggtttatcactatcgtttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatac 235  Q
    |||||||| |||||||||| |||||  |||||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  32772804 gggtttat-actatcgttttgtcttctaggatgaaaattcgatataaacattcattattttaatcaatttatttgttcatttgatttataatcatcatac 32772902  T
Q  236 tttgactatcagact 250  Q
    |||||||||||||||    
T  32772903 tttgactatcagact 32772917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 21502988 - 21502896
Alignment:
Q  157 tctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||| ||||||| | |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21502988 tctttcagaatgaaaactcgatataaac----attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 21502896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 21503124 - 21503060
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21503124 attattttagtcaatttacttgttcatttgatctataatcatcgtactttgactatcagactaat 21503060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 207922 - 207986
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  207922 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 207986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 208348 - 208412
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  208348 attatttcagttaatttacttgttcatttgatctataatcatcatactttgactatcatactaat 208412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 208064 - 208150
Alignment:
Q  163 aggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||| | |||||||||    ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  208064 aggatgaaaactcgatataaac----attatttgagtcaatttatttgttcatttgatctataatcatcatactttgattatcatactaat 208150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 208228 - 208314
Alignment:
Q  163 aggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||| | |||||||||    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  208228 aggatgaaaactcgatataaac----attatttgagtcaatttacttgttcatttgatctataatcatcacagtttgactatcatactaat 208314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 208512 - 208576
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||    
T  208512 attatttcagtcaatttacttgttcatttgatatataatcatcatactttgactataatactaat 208576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 21961815 - 21961751
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21961815 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 21961751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 22012094 - 22011997
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagacta 251  Q
    |||| |||| ||||||||||| | |||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  22012094 tttcatcttccaggatgaaaactcgatataaac----attattttagtcaatttacttgttcatttgatctgtaatcatcatactttgactatcatacta 22011999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 22013435 - 22013371
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22013435 attattttagtctatttacttgttcatttgatctataatcatcatactttgactatcatactaat 22013371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 21961389 - 21961325
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21961389 attatttcagttaatttacttgttcatttgatctataatcatcatactttgactatcatactaat 21961325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 21961509 - 21961423
Alignment:
Q  163 aggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||| | |||||||||    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  21961509 aggatgaaaactcgatataaac----attatttgagtcaatttacttgttcatttgatctataatcatcacagtttgactatcatactaat 21961423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 21961673 - 21961587
Alignment:
Q  163 aggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||| | |||||||||    ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  21961673 aggatgaaaactcgatataaac----attatttgagtcaatttatttgttcatttgatctataatcatcatactttgattatcatactaat 21961587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 21961225 - 21961161
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||    
T  21961225 attatttcagtcaatttacttgttcatttgatatataatcatcatactttgactataatactaat 21961161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 19735339 - 19735402
Alignment:
Q  190 ttattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| | ||||||    
T  19735339 ttattttagtcaaattacttgttcattagatctataatcatcttactttgactattacactaat 19735402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 21960889 - 21960833
Alignment:
Q  197 agtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||    
T  21960889 agtcaattaatttgttcatttgatcgataatcatcatactttgactatcatactaat 21960833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 21961053 - 21960997
Alignment:
Q  197 agtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||    
T  21961053 agtcaattaagttgttcatttgatcgataatcatcatactttgactatcatactaat 21960997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 52071044 - 52071108
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52071044 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 52071108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 2363474 - 2363421
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  2363474 attattttagtcaagttactgtttcatttgatctattatcatcatactttgact 2363421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 17424601 - 17424505
Alignment:
Q  153 ttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaa 252  Q
    |||||||||||||||||||| | |||||||||    |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  17424601 ttcgtctttcaggatgaaaactcgatataaac----attattttagtcaatttactagttcatttgatctataattatcatattttgactatcagactaa 17424506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 19768 - 19704
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgactatcagactaat 253  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  19768 attattttagtcaatttaattgttcatttgatctataatcatcatattttgactatcagactaat 19704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 19540 - 19462
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcata 234  Q
    ||||||||| ||||||||||| | |||||||||    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19540 tttcgtcttccaggatgaaaactcgatataaac----attattttagtcaatttacttgttcatttgatctattatcatcata 19462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 29907856 - 29907942
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    ||||||||| ||||||||||| | ||| |||||    |||||||||||||| |||||||||||||   | |||| ||||||||||||||||    
T  29907856 tttcgtcttccaggatgaaaactcgatttaaac----attattttagtcaagttacttgttcattgattatatattcatcatactttgact 29907942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 29906410 - 29906494
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttga 240  Q
    ||||||||| ||||||||||| | ||| |||||    |||||||||||||| ||||||||||||  | | |||| ||||||||||||||    
T  29906410 tttcgtcttccaggatgaaaaatcgatttaaac----attattttagtcaagttacttgttcataggttatatattcatcatactttga 29906494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 30117970 - 30117886
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttga 240  Q
    ||||||||| ||||||||||| | ||| |||||    |||||||||||||| ||||||||||||  | | |||| ||||||||||||||    
T  30117970 tttcgtcttccaggatgaaaaatcgatttaaac----attattttagtcaagttacttgttcataggttatatattcatcatactttga 30117886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 29906110 - 29906163
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||||||||| ||||||||||||| | | |||| ||||| ||||||||||    
T  29906110 attattttagtcaagttacttgttcattggttatatattcatcctactttgact 29906163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 29906244 - 29906330
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||||  |||||||||||||||| |||||    | |||||||||||| ||||||||| ||| | | |||| ||||| ||||||||||    
T  29906244 tttcgtcttctaggatgaaaatttgatttaaac----aatattttagtcaagttacttgttaattggttatatattcatcctactttgact 29906330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 29907721 - 29907774
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||||||||| ||||||||||||| | | |||| ||||| ||||||||||    
T  29907721 attattttagtcaaattacttgttcattggttatatattcatcctactttgact 29907774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 30118136 - 30118050
Alignment:
Q  152 tttcgtctttcaggatgaaaatttgatataaacgtttattattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||||  |||||||||||||||| |||||    | |||||||||||| ||||||||| ||| | | |||| ||||| ||||||||||    
T  30118136 tttcgtcttctaggatgaaaatttgatttaaac----aatattttagtcaagttacttgttaattggttatatattcatcctactttgact 30118050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 30118270 - 30118217
Alignment:
Q  189 attattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||||||||| ||||||||||||| | | |||| ||||| ||||||||||    
T  30118270 attattttagtcaagttacttgttcattggttatatattcatcctactttgact 30118217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 30120938 - 30120886
Alignment:
Q  190 ttattttagtcaatttacttgttcatttgatctataatcatcatactttgact 242  Q
    |||||||| |||| ||||||||||||| | | |||| ||||||||||||||||    
T  30120938 ttattttactcaagttacttgttcattggttatatattcatcatactttgact 30120886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 10022 - 10063
Alignment:
Q  194 tttagtcaatttacttgttcatttgatctataatcatcatac 235  Q
    ||||||||| |||| |||||||| ||||||||||||||||||    
T  10022 tttagtcaaattacatgttcattagatctataatcatcatac 10063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University