View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12958_low_1 (Length: 548)
Name: NF12958_low_1
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12958_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 55003473 - 55002951
Alignment:
| Q |
16 |
atccaatcctttcacgagtttcnnnnnnncattggaagaaaatttaggtaagaggcttccgagaacgttctccatctctttagggtatttaccaaatatg |
115 |
Q |
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| T |
55003473 |
atccaatcctttcatgagtttctttttttcattggaagaaaatttaggtaagaggcttccaagaacgttctccatctctttagggtatttaccaaatatg |
55003374 |
T |
|
| Q |
116 |
attgggtccaaaatcctgtatttttatttgagtatatttacactatgaggctctcatctttatacttcgagtgaatcaatagaaaaagctactatattag |
215 |
Q |
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| T |
55003373 |
attgggtccaaaatcctgtatttttatttgagtatatttacactatgaggctctcatctttatactttgagtgaatcaatagaaaaagctactatattag |
55003274 |
T |
|
| Q |
216 |
tatttaaaggagaattataccaattgaaggtgaatgatcttgctctttcagcagccaatttgtcagcagtagagttgctcattggttcataccattcata |
315 |
Q |
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| T |
55003273 |
tatttaaaggagaattataccaattgaaggtgaatgatcttgctctttcagcagccaatttgtcagcattagagttgctcattggttcataccattcatg |
55003174 |
T |
|
| Q |
316 |
tgaaatcactattccaattcttcctttctgctcagcctgatatgtttcacttttaaaatacgatgttttacaatc---------aaataactataattcg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55003173 |
tgaaatcactattccaattcttcctttctgctcagcctgatatgtttcacttttaaaatacgatgttttacaatcaaatcaatcaaataactataattcg |
55003074 |
T |
|
| Q |
407 |
tatgatttgagaaatctatcaagtcgatcagcaagaaaatacaagttgacattggtaataatttgatataatagaaattattggatgtaccacatgcatt |
506 |
Q |
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| T |
55003073 |
tatgatttgagaaatctatcaagtcgatcagcaagaaaatacaagttgacattggtaataatttgataaaatagaaatgattggatgtaccacatgcatt |
55002974 |
T |
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| Q |
507 |
ggcatcatgttaggcacccgata |
529 |
Q |
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|||||| |||||||||||||||| |
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| T |
55002973 |
ggcatcgtgttaggcacccgata |
55002951 |
T |
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