View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12958_low_3 (Length: 510)

Name: NF12958_low_3
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12958_low_3
NF12958_low_3
[»] chr1 (3 HSPs)
chr1 (5-496)||(42730335-42730826)
chr1 (396-496)||(28346924-28347024)
chr1 (22-109)||(28347329-28347416)
[»] chr2 (2 HSPs)
chr2 (6-178)||(40352082-40352254)
chr2 (393-490)||(40352478-40352575)
[»] chr4 (3 HSPs)
chr4 (6-178)||(21716183-21716355)
chr4 (423-490)||(21715844-21715911)
chr4 (30-101)||(51742176-51742244)
[»] chr3 (1 HSPs)
chr3 (438-493)||(33107258-33107313)
[»] scaffold0041 (2 HSPs)
scaffold0041 (9-94)||(96356-96441)
scaffold0041 (6-94)||(88348-88436)
[»] chr7 (2 HSPs)
chr7 (9-94)||(40869841-40869926)
chr7 (6-94)||(40877847-40877935)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 5 - 496
Target Start/End: Complemental strand, 42730826 - 42730335
Alignment:
Q  5 atgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730826 atgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgc 42730727  T
Q  105 attgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaattta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730726 attgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaaagatcttccattaacagcacaattta 42730627  T
Q  205 cagcttcaacaacagattcagctcctacttttcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaacaccacc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730626 cagcttcaacaacagattcagctcctacttttcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaacaccacc 42730527  T
Q  305 aaacataggtgatacacggttccaagtactagaagaattagaaaactgatcagttccaccaccaattccacctttctttgctctccttataccaacacaa 404  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730526 aaacaaaggtgatacacggttccaagtactagaagaattagaaaactgatcagttccaccaccaattccacctttctttgctctccttataccaacacaa 42730427  T
Q  405 agatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaattactccaaccagttgtcaaaag 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42730426 agatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaattactccaaccagttgtcaaaag 42730335  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 396 - 496
Target Start/End: Complemental strand, 28347024 - 28346924
Alignment:
Q  396 ccaacacaaagatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaattactccaaccagttgtcaaaa 495  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| ||||||||||||| |||||||    
T  28347024 ccaacacaaagatcaccattttccgctctcaaaaacacaattgaatccccagcaagaagcttcttctgattaacaaaagtactccaaccagtagtcaaaa 28346925  T
Q  496 g 496  Q
    |    
T  28346924 g 28346924  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 28347416 - 28347329
Alignment:
Q  22 ttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgc 109  Q
    |||||||||||||||| || | ||| |||||||| |||||||| | ||| |||||||| || |||||||||||| |||| ||||||||    
T  28347416 ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctgcattgc 28347329  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 40352082 - 40352254
Alignment:
Q  6 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgca 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || || ||||| ||||||||||||||||||  ||    
T  40352082 tgaacagaagaaatagttcccatgaaccaactaatcctagaagaatcttcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctca 40352181  T
Q  106 ttgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa 178  Q
    | |||| |||||| |  |||  ||||| |||||| ||||||||||| ||||| |||||||| || ||||||||    
T  40352182 tagcagctttaacagctgaagtcttaatacaaaactcaggagtacttgctctaggataataaactacctcaaa 40352254  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 393 - 490
Target Start/End: Original strand, 40352478 - 40352575
Alignment:
Q  393 ataccaacacaaagatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaattactccaaccagttgt 490  Q
    ||||||||| |||| |||||| |||| ||||||| ||||||||| |||||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  40352478 ataccaacaaaaagttctccactttcagctctcagaaacacaatagaatcacctgcaacaagctttttctggttcacaaaactactccaaccagttgt 40352575  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 21716355 - 21716183
Alignment:
Q  6 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgca 105  Q
    ||||||||||  || ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||||||   ||    
T  21716355 tgaacagaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctca 21716256  T
Q  106 ttgcagatttaactgaagaaaccttaacacaaaattcaggagtactagctcttggataatacacaacctcaaa 178  Q
    | ||||  || || |  ||| |||||||||| || |||||||| |||||||||||||| || ||||| |||||    
T  21716255 tagcagccttcacagctgaagccttaacacagaactcaggagtgctagctcttggatagtaaacaacttcaaa 21716183  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 21715911 - 21715844
Alignment:
Q  423 ctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaattactccaaccagttgt 490  Q
    ||||||||||| |  ||||||||||||||||||||||| || ||||||||| ||||||| || |||||    
T  21715911 ctcaaaaacaccacagaatcaccagcaacaagcttcttctggttcacaaaactactccaccctgttgt 21715844  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 51742244 - 51742176
Alignment:
Q  30 aaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacaccattgaatt 101  Q
    ||||||||||| |||||||||||||||||||  || ||||| || || |||| |||||||||||||||||||    
T  51742244 aaccaactaatactagaagaatcctcagttt--aatggcatctt-aaactcacaccagaacaccattgaatt 51742176  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 33107313 - 33107258
Alignment:
Q  438 gaatcaccagcaacaagcttcttatgattcacaaaattactccaaccagttgtcaa 493  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||| || |||||    
T  33107313 gaatcaccagcaacaagcttcttagcgttcacaaacttactccaaccggtggtcaa 33107258  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 96441 - 96356
Alignment:
Q  9 acagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 94  Q
    ||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  ||||| ||||| ||||| |||| ||||||    
T  96441 acagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca 96356  T

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Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 88436 - 88348
Alignment:
Q  6 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 94  Q
    |||||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  | ||| ||||| ||||| |||| ||||||    
T  88436 tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca 88348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 40869841 - 40869926
Alignment:
Q  9 acagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 94  Q
    ||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  ||||| ||||| ||||| |||| ||||||    
T  40869841 acagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca 40869926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 40877847 - 40877935
Alignment:
Q  6 tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca 94  Q
    |||||||||| || |||||| ||||||||||| ||||| || || ||||| |||||||  | ||| ||||| ||||| |||| ||||||    
T  40877847 tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca 40877935  T

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