View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12958_low_5 (Length: 421)

Name: NF12958_low_5
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12958_low_5
NF12958_low_5
[»] chr8 (1 HSPs)
chr8 (160-421)||(7494753-7495015)
[»] chr3 (1 HSPs)
chr3 (1-292)||(53325191-53325484)
[»] chr7 (2 HSPs)
chr7 (4-292)||(35048700-35048989)
chr7 (1-204)||(15635901-15636103)
[»] chr1 (3 HSPs)
chr1 (1-292)||(14122374-14122667)
chr1 (17-220)||(41698403-41698604)
chr1 (17-220)||(41703997-41704198)
[»] chr4 (3 HSPs)
chr4 (1-292)||(20007699-20007994)
chr4 (17-220)||(54078346-54078547)
chr4 (171-292)||(49622455-49622579)
[»] chr2 (1 HSPs)
chr2 (90-285)||(1177867-1178063)
[»] chr5 (2 HSPs)
chr5 (110-204)||(9284813-9284908)
chr5 (100-173)||(23556713-23556787)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 7495015 - 7494753
Alignment:
Q  160 tcttctagtatttggtaaattcttcttcaggactaaatgtcatcctaaccttaagttcatcttcctgaacaatattttcttcaaaattatcatctcaatt 259  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7495015 tcttgtagcatttggtaaattcttcttccggactaaatgtcatcctaaccttaagttcatcttcatgaacaatattttcttcaaaattatcatctcaatt 7494916  T
Q  260 ctcatttatgtgatcactctcctcttggtcagatgaggtaaatcttacccccactagtgcaccga-nnnnnnngaaacaagatacttaaattaatcaact 358  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||    
T  7494915 ctcatttatgtgatcactctcctctttgtcagatgaggtaaatcttacccccactagtgccccgattttttttaaaacaagatacttaaattaatcaact 7494816  T
Q  359 aacataataagccaagacaacaagaatctgtccaactaaataagaaaaagcaacaaatagaca 421  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  7494815 aacataataagccaagacaacaagaatctgtccaactaagtaagaaaaagcaataaatagaca 7494753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 53325191 - 53325484
Alignment:
Q  1 cattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcc 100  Q
    |||||||||||| |  ||||||||||  |||| |  |||||| | |||||||||||||||||||||| | ||||  ||||| ||||| ||||||  || |    
T  53325191 cattgtgctcttatggtaggatttggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtacatcctagagtaaagtattttt--tttc 53325288  T
Q  101 catcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgt 199  Q
    |||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||| |||| || |||||||||| ||||||||||| | |||||||    
T  53325289 catcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaatttcttcttcagaattaaatgt 53325388  T
Q  200 catcctaaccttaag---ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga 292  Q
    ||||| || | || |   ||||||| | |||||||||||| |||| ||||| | ||| | ||| |||||||||||||||  |||||||||| ||||    
T  53325389 catcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaatttttatcactattttcatttatgtgatcaacctcctcttggacaga 53325484  T

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Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 35048989 - 35048700
Alignment:
Q  4 tgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcccat 103  Q
    ||||||||| |  |||||||||| ||||| |  |||||| | |||||||||||||||||||||||| ||||  ||||| ||||| |||||||    ||||    
T  35048989 tgtgctcttatggtaggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagtattttttt---ccat 35048893  T
Q  104 catctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgtcat 202  Q
    | | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||  |||| || |||||| ||| ||||||||||| ||||||||||||    
T  35048892 cctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttgtaatatttgataacttcttcttcagaactaaatgtcat 35048793  T
Q  203 cctaaccttaagt---tcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga 292  Q
    || || | || ||   |||||| | |||||||||||| |||| ||||| ||||| |  || |||||||||||||||  |||||||||| ||||    
T  35048792 cccaatcctaggttcctcatctgcttgaacaatatttgcttctaaattttcatcactgttttcatttatgtgatcaacctcctcttggacaga 35048700  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 15635901 - 15636103
Alignment:
Q  1 cattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcc 100  Q
    |||||||||||| |  |||| ||||| ||||| |  |||||| | |||||||||||||||||||||||| ||||  ||||| ||||| |||||||    |    
T  15635901 cattgtgctcttatggtagggtttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagtattttttt---c 15635997  T
Q  101 catcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctag-tatttggtaaattcttcttcaggactaaatg 198  Q
    |||| | | |||||||| || ||||||||  | ||||||||||| |||| | ||||||| |||| ||  |||||||||| ||||||||||  ||||||||    
T  15635998 catcctttgcatttttttaattgattttaacagttccaaaacccatacatctagcataactcttgtaaatatttggtaatttcttcttcataactaaatg 15636097  T
Q  199 tcatcc 204  Q
    ||||||    
T  15636098 tcatcc 15636103  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 14122667 - 14122374
Alignment:
Q  1 cattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcc 100  Q
    |||||||||||| | ||||||||||| ||||| |  ||||||   |||||||||||||||||||||| | ||||  ||||| ||||| ||||||  || |    
T  14122667 cattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtacatcctagagtaaagtattttt--tttc 14122570  T
Q  101 catcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgt 199  Q
    |||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||  |||| || |||||||||| ||||||||||| | |||||||    
T  14122569 catcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatttggtaacttcttcttcagaattaaatgt 14122470  T
Q  200 catcctaacctta---agttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga 292  Q
    ||||| || | ||     ||||||| | |||||||||||| |||| ||||| ||||| | ||| ||||||| |||||||  |||||||||| ||||    
T  14122469 catcccaatcctagattcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttaggtgatcaacctcctcttggacaga 14122374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 41698604 - 41698403
Alignment:
Q  17 taggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcccatcatctccattttt 116  Q
    ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||| ||||  | |||||    |||||||||||||||||    
T  41698604 taggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaaatactttttt---ccatcatctccattttt 41698508  T
Q  117 tgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgtcatcctaaccttaagt 215  Q
    || | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||  || |||||||  || | ||||| |||| | ||||||| ||    
T  41698507 tgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggt 41698408  T
Q  216 tcatc 220  Q
    |||||    
T  41698407 tcatc 41698403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 41704198 - 41703997
Alignment:
Q  17 taggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcccatcatctccattttt 116  Q
    ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||| ||||  | |||||    |||||||||||||||||    
T  41704198 taggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaaatactttttt---ccatcatctccattttt 41704102  T
Q  117 tgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgtcatcctaaccttaagt 215  Q
    || | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||  || |||||||  || | ||||| |||| | ||||||| ||    
T  41704101 tgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggt 41704002  T
Q  216 tcatc 220  Q
    |||||    
T  41704001 tcatc 41703997  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 20007699 - 20007994
Alignment:
Q  1 cattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcc 100  Q
    |||||||||||| | ||||||||||| ||||| |  ||||||   |||||||||||||||||||||| | ||||  ||||| ||||| ||||||| || |    
T  20007699 cattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtacatcctagagtaaagtattttttttttc 20007798  T
Q  101 catcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgt 199  Q
    |||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||  |||| || ||| |||||| ||||||||||  | |||||||    
T  20007799 catcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatctggtaacttcttcttcataattaaatgt 20007898  T
Q  200 catcctaacctta---agttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga 292  Q
    ||||| || | ||     ||||| | | |||||||||||| |||| ||||| | ||| | ||| ||||||| |||||||  |||||||||| ||||    
T  20007899 catcccaatcctagattcttcatttgcttgaacaatatttgcttctaaattttaatcactattttcatttaggtgatcaacctcctcttggacaga 20007994  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 54078346 - 54078547
Alignment:
Q  17 taggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcccatcatctccattttt 116  Q
    ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||| ||||  | |||||    |||||||||||||||||    
T  54078346 taggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaaatactttttt---ccatcatctccattttt 54078442  T
Q  117 tgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgtcatcctaaccttaagt 215  Q
    || | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||  || |||||||  || | ||||| |||| | ||||||| ||    
T  54078443 tgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggt 54078542  T
Q  216 tcatc 220  Q
    |||||    
T  54078543 tcatc 54078547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 292
Target Start/End: Complemental strand, 49622579 - 49622455
Alignment:
Q  171 ttggtaaattcttcttcaggactaaatgtcatcctaaccttaagttcatcttc---ctgaacaatattttcttcaaaattatcatctcaattctcattta 267  Q
    ||||||| ||||||||||| |||||||||||||| || | || ||||||| ||    |||||||||||| |||| ||||| |||||    || |||||||    
T  49622579 ttggtaacttcttcttcagaactaaatgtcatcccaatcctaggttcatcatctgattgaacaatatttgcttctaaattttcatcattgttttcattta 49622480  T
Q  268 tgtgatcactctcctcttggtcaga 292  Q
    ||||||||  |||||||||| ||||    
T  49622479 tgtgatcaacctcctcttggacaga 49622455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 285
Target Start/End: Complemental strand, 1178063 - 1177867
Alignment:
Q  90 ttttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttca 188  Q
    |||||| || ||||||| | |||| ||| || ||||||||| ||||||||||||| |||| | |||||||| |||  | |||||  |||   ||||||||    
T  1178063 ttttttttttccatcatttgcattcttttaattgattttaccaattccaaaacccatacatcaagcataatactttcaatattttataa---cttcttca 1177967  T
Q  189 ggactaaatgtcatcctaaccttaagttcat---cttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctctt 285  Q
    | || ||||| ||||| ||||||||||||||   |||| |||| ||||||| |||| |||||  |||  ||||  ||||||||||||||  |||||||||    
T  1177966 gaacaaaatgacatcccaaccttaagttcatctgcttcttgaataatatttgcttctaaatttccattgcaatattcatttatgtgatcgatctcctctt 1177867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 9284813 - 9284908
Alignment:
Q  110 cattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgtcatcc 204  Q
    ||||||||||| | |||||||  |||||||| ||| |||| | | |||||||||| || ||| |||||| ||||||||| | ||||||||||||||    
T  9284813 cattttttgaatttattttaccgattccaaagcccatacatcaaacataattcttgtaatatgtggtaatttcttcttcggaactaaatgtcatcc 9284908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 23556787 - 23556713
Alignment:
Q  100 ccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttg 173  Q
    ||||||||||||||||||| | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||    
T  23556787 ccatcatctccattttttgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttg 23556713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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