View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12958_low_6 (Length: 410)
Name: NF12958_low_6
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12958_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 33426944 - 33427325
Alignment:
| Q |
8 |
agataattcttcaagaaaaacagctgtttcaaagcattcagcagcttccaatgctgatgttcccaaatcagctttgtagagaagtccaagattgtaccat |
107 |
Q |
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| T |
33426944 |
agatgattcttcaagaaaaacagctgtttcaaagcattcagcagcttccaatgctgatgttcccaaatcagctttgtagagaagtccaagattgtaccat |
33427043 |
T |
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| Q |
108 |
gcagatgaatttgttgtgtcaagctttaatgcatcggtgagaaggcttctaacaattaaagatgacgattgaccaccaagttttctcagaacacaagctg |
207 |
Q |
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| T |
33427044 |
gcagatgaatttgttgtgtcaagctttaatgcatcggtgagaaggcttctaacaattaaagatgatgattgaccgccaagttttctcagaacacaagctg |
33427143 |
T |
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| Q |
208 |
ttgatatcaaacttgccacatggtttggctcaatatctaatgcttttttatatgatttcaatgcttctcgatcaagacctcttgcttcattaagtaaacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
33427144 |
ttgatatcaaacttgccacatggtttggctcaatatctaatgcttttttatatgatttcaatgcttcttgatgaagacctcttgcttcattaagtaaacc |
33427243 |
T |
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| Q |
308 |
tgcataaacttaacttaatgatgaacattactacatgaagattattgtatctgaagatgttaatcttcaataatattaagtt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
33427244 |
tgcataaacttaacttaatgatgaacattactacatgaagaatattgtatctgaagatgttaagcttcaataatattaagtt |
33427325 |
T |
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