View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12958_low_8 (Length: 343)
Name: NF12958_low_8
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12958_low_8 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 12888376 - 12888706
Alignment:
| Q |
15 |
ataaacatagagaaatattggcattgacataccaaaaattgattcctaacaaccaaacaatataaacccttaaacatcttcatgtttaccctttataaac |
114 |
Q |
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| T |
12888376 |
ataaacatagagaaatattggcattgacataccaaaaattgattcctaacaaccaaacaatataaacccttaaacatcttcatgtttaccctttataaac |
12888475 |
T |
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| Q |
115 |
cctcttttattcattcaattatttttccttattaaaaagattattgactaaatgat--nnnnnnnnntggaaagaaagaaggtgaataataataatgctt |
212 |
Q |
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| T |
12888476 |
cctcttttattcattcaattatttttccttattaaaaagattattgactaaatgataaaaaaaaaaatggaaagaaagaaggtgaataataataatgctt |
12888575 |
T |
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| Q |
213 |
acaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaacaccgttgctgtgtt |
312 |
Q |
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| T |
12888576 |
acaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaagaccgttgctgtgtt |
12888675 |
T |
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| Q |
313 |
gttgttgttgaaatgacatggttgctctgtg |
343 |
Q |
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| T |
12888676 |
gttgttgttgaaatgacattgttgctttgtg |
12888706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 12904782 - 12904868
Alignment:
| Q |
206 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccata |
292 |
Q |
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| T |
12904782 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcactcccacgtccata |
12904868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 12895383 - 12895442
Alignment:
| Q |
15 |
ataaacatagagaaatattggcattgacataccaaaaattgattcctaacaaccaaacaa |
74 |
Q |
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| T |
12895383 |
ataaacatagagaaatattggcattgacataccaaaaatttagtcctaacaaccaaacaa |
12895442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 12876622 - 12876531
Alignment:
| Q |
207 |
atgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaac |
298 |
Q |
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| T |
12876622 |
atgcttactagctcttgatcttgcaactcacgaagttgaatagttcggtagaaatgcattcccttagcatcacttccacggccatagtgaac |
12876531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 12895503 - 12895561
Alignment:
| Q |
86 |
aaacatcttcatgtttaccctttataaaccctcttttattcattcaattatttttcctt |
144 |
Q |
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| T |
12895503 |
aaacatattcatgtttaccctttataagctctattttattcattctattatttttcctt |
12895561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 12924903 - 12924965
Alignment:
| Q |
206 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattcc |
268 |
Q |
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| T |
12924903 |
aatgcttacaagttcatcatcttgcaactcacgaagttgaatggttagataaaaatgcattcc |
12924965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 12895803 - 12895847
Alignment:
| Q |
86 |
aaacatcttcatgt--ttaccctttataaaccctcttttattcat |
128 |
Q |
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| T |
12895803 |
aaacatcttcatgtaattaccctttataaaccctcttttattcat |
12895847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 12929833 - 12929873
Alignment:
| Q |
251 |
tagataaaaatgcattccatgagcttcacttccacgcccat |
291 |
Q |
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| T |
12929833 |
tagataaaaatgcattccatgatcttcactgccacgcccat |
12929873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 21114023 - 21113932
Alignment:
| Q |
208 |
tgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaaca |
299 |
Q |
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| T |
21114023 |
tgcttacaaggtcttgatcatgcatctggagaaattgaatagttagatagaaatgcattcccttagcttcactcccacgcccattgtgaaca |
21113932 |
T |
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