View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12958_low_9 (Length: 329)
Name: NF12958_low_9
Description: NF12958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12958_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 93 - 319
Target Start/End: Original strand, 12888783 - 12889012
Alignment:
| Q |
93 |
ttagctttgcttctgtggtcgaacttgaagaagttaaaatagaa-gtacaccaaaccaaa---tattagatttgagtttgacaagtctttctaggcatca |
188 |
Q |
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| T |
12888783 |
ttagctttgcttatgtggtagaacttgaagaagttagaatagaaagtacaccaaaccaaaagatattagatttgagtttgacaagtctttctaggcatca |
12888882 |
T |
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| Q |
189 |
tgtgacgtgtagaaaatacgaaaatgcagaaaaaagcctgtccaatccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagtta |
288 |
Q |
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| T |
12888883 |
tgtgacatgtagaaaatacgaaaatgcagaaaa-agcctgtccaatccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagtta |
12888981 |
T |
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| Q |
289 |
ttgccataccaagcataactgtgtgtctgtg |
319 |
Q |
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| T |
12888982 |
ttgccataccaagcataactgtgtatctgtg |
12889012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 12891277 - 12891352
Alignment:
| Q |
234 |
tccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagttattgccataccaagcataactg |
309 |
Q |
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| T |
12891277 |
tccagctctttattttgaaaggatcccttgaatgaaccggttttaatacaagttattgccttaacaagcataactg |
12891352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 12888692 - 12888721
Alignment:
| Q |
2 |
cattgttgctttgtgttgtgactttatggg |
31 |
Q |
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| T |
12888692 |
cattgttgctttgtgttgtgactttatggg |
12888721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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