View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12959_high_1 (Length: 640)
Name: NF12959_high_1
Description: NF12959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12959_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 40207469 - 40208021
Alignment:
| Q |
18 |
aatagtagcaataacacgtgtgataacaattggaatatcactagctcatttatgccaacatattgtaactaattaagatctcacaattgttacaagcttc |
117 |
Q |
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| T |
40207469 |
aatagtagcaataacacgtgtgataacaattggaatatcacaagctcatttatgccaacatattgtaactaattaagatctcacaattgttacaagcttc |
40207568 |
T |
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| Q |
118 |
tttgtattttccttggatctttctacaaaggataatagtggcggcagcatgtgtcaataaacgtggatcattttatggctcatgttggattatagttttt |
217 |
Q |
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| T |
40207569 |
tttgtattttccttggatcttactataaaggataatagtggcggcagcatgtgtcaataaacgtggatcattttatggctcatgttggattatagttttt |
40207668 |
T |
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| Q |
218 |
catcttgaacagtgacacagttttgaaaacttcatatggtaacacttggctaatggatacggtacaccaaactaattgtcgatcttaacatgaaaacgat |
317 |
Q |
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| T |
40207669 |
catcttgaacagtgacacagttttgaaaacttcatatggtaacacttggctaa----------------------ttgtcgatcttaacatgaaaacgat |
40207746 |
T |
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| Q |
318 |
tgtgaatatgataagcacagataattnnnnnnnnnnnnnnctcgattctatgtttaatcatgcaccaattaggacccaatgttactacaggccattgaga |
417 |
Q |
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| T |
40207747 |
tgtgaatatgataagcacagataatt---tacacacacacctcgattctatgtttaacctagcaccaattaggacccaatgttactgcaggccattgaga |
40207843 |
T |
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| Q |
418 |
gtatttggctagaaatccaacaagatctactgatgaatcagcattatgttcaccccttgtatacaatattgacatatcatagatcatatagagtaacaag |
517 |
Q |
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| T |
40207844 |
gtatttggctagaaatccaacaacatctactgatgaatcagcattatgttcaccccttgtatacaatattgacatatcatagatcatatagagtaacaag |
40207943 |
T |
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| Q |
518 |
caatcaaataactgacaataggacgataaattcaa---gaagaaatggaactttgaacaatattaactttcaatgcaa |
592 |
Q |
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| T |
40207944 |
caatcaaataactgacaataggacgataaattcaagctgcagaaatggaactttgaacaatattcactttcaatgcaa |
40208021 |
T |
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