View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12959_high_3 (Length: 278)
Name: NF12959_high_3
Description: NF12959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12959_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 43576383 - 43576633
Alignment:
| Q |
14 |
gaagagttgccaagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaag |
113 |
Q |
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| T |
43576383 |
gaagagttgccaagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggattttcatttgaag |
43576482 |
T |
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| Q |
114 |
ctccatcaatattgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggt |
213 |
Q |
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| T |
43576483 |
ctccatcaatattgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggaactctaggttgatgagtagagacattgaaggt |
43576582 |
T |
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| Q |
214 |
cttgataatggtgaagtctcttatggggtttgtagaatgtttttcttgttg |
264 |
Q |
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| T |
43576583 |
cttgataatggtgaagtctcttatggagtttgtagaatgtttttcttgttg |
43576633 |
T |
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Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 58 - 264
Target Start/End: Original strand, 32247359 - 32247564
Alignment:
| Q |
58 |
ttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaaaattgaagaggaggactc |
157 |
Q |
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| T |
32247359 |
ttcatgatttctaaatattccaccacaagctgagctgccaggatttccatttgaagctccatcaatattgcacttaatccaagattgaagaggaggactc |
32247458 |
T |
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| Q |
158 |
caaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgataatggtgaagtctcttatggggtttgtagaatgttttt |
257 |
Q |
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| T |
32247459 |
caaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgataatgatgaagtctcttatggagtttgtagaa-gttttt |
32247557 |
T |
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| Q |
258 |
cttgttg |
264 |
Q |
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| T |
32247558 |
catgttg |
32247564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 21852377 - 21852563
Alignment:
| Q |
24 |
caagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaat |
123 |
Q |
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| T |
21852377 |
caagaggttcagtaaagcagcaaagaaaatctgcttcattgttcctaaaaatgcctccacaacttaagtttcctggatttccaatggaagctccatcaat |
21852476 |
T |
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| Q |
124 |
attgcacttaatccaa-aattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacattgaa |
210 |
Q |
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| T |
21852477 |
attgcacttaatccaagaattg-agaggtggactccagataacttctttaatagtaggagctctaggatgatgggtggaaacattgaa |
21852563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 10512802 - 10512882
Alignment:
| Q |
59 |
tcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaa |
139 |
Q |
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| T |
10512802 |
tcatgatctctaaaaataccaccacatacagagtttccaggattaccatttgaagcaccaccgatgttgcatttaatccaa |
10512882 |
T |
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