View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12959_high_4 (Length: 203)

Name: NF12959_high_4
Description: NF12959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12959_high_4
NF12959_high_4
[»] chr3 (22 HSPs)
chr3 (22-187)||(10263385-10263550)
chr3 (14-187)||(9841542-9841715)
chr3 (14-187)||(10520169-10520342)
chr3 (14-187)||(10666150-10666323)
chr3 (19-187)||(9980150-9980318)
chr3 (14-187)||(9852423-9852596)
chr3 (18-138)||(10431257-10431377)
chr3 (18-129)||(10034745-10034856)
chr3 (18-187)||(10583197-10583366)
chr3 (13-126)||(10361012-10361125)
chr3 (19-142)||(10373059-10373182)
chr3 (18-145)||(10129648-10129775)
chr3 (13-187)||(10091481-10091655)
chr3 (13-187)||(10198363-10198537)
chr3 (21-75)||(10503378-10503432)
chr3 (13-84)||(10192883-10192954)
chr3 (13-84)||(10085963-10086034)
chr3 (14-73)||(10531579-10531638)
chr3 (14-73)||(10680377-10680436)
chr3 (19-187)||(11779199-11779367)
chr3 (19-152)||(11771953-11772086)
chr3 (13-58)||(13852654-13852699)
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-187)||(54819-54987)
[»] chr8 (1 HSPs)
chr8 (13-143)||(11487757-11487887)
[»] chr2 (1 HSPs)
chr2 (14-187)||(26909572-26909745)
[»] chr4 (1 HSPs)
chr4 (13-73)||(17850134-17850194)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 10263550 - 10263385
Alignment:
Q  22 aagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggagaccc 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  10263550 aagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttttgaatagtcaagtaggaaagtgctgtcaaatattggagaccc 10263451  T
Q  122 cattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    ||||||||||| |||||||||||||||||||||||||| |||||  || |||||||||||||||||    
T  10263450 cattccgtaaccggcggtgttgttttttgggtagaaatctcaattgattgtaatttgggaggtaga 10263385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 9841715 - 9841542
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||   ||||||||||||||| ||||||||||    
T  9841715 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttatcaattcgcaagtaggaaagtgccgtcaaatatt 9841616  T
Q  114 ggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    || |||||||||||||||| ||||||| ||||||||||||||||||  ||||  || |||||||||||||||||    
T  9841615 ggtgaccccattccgtaaccggcggtgctgttttttgggtagaaatagcaattgattgtaatttgggaggtaga 9841542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 10520342 - 10520169
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatatt 113  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||  ||||| ||||||||||||||||||||    
T  10520342 agagtcacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatacccaagtcggaaagtgctgtcaaatatt 10520243  T
Q  114 ggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| | |||  || | |||||||||||||||    
T  10520242 ggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcttaattgattgcaatttgggaggtaga 10520169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 10666323 - 10666150
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatatt 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  10666323 agagacacaagggatatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttcaatactcaagtaggaaagtgctgtcaaatatt 10666224  T
Q  114 ggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    ||||||||||||||||||| ||||| ||| || |||| |  |||||  ||||   | |||||||||||||||||    
T  10666223 ggagaccccattccgtaaccggcggagttattctttgagatgaaatcacaattgtttgtaatttgggaggtaga 10666150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 9980318 - 9980150
Alignment:
Q  19 cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggaga 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||  |||||| | |||||||||||||||||||||||    
T  9980318 cacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaattctcaagtcgaaaagtgctgtcaaatattggaga 9980219  T
Q  119 ccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    |||||||||||||| ||||||| |||||||| |||||||||  ||||  || |||||||| ||||||||    
T  9980218 ccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttgagaggtaga 9980150  T

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Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 9852596 - 9852423
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatatt 113  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||   |||  | ||||| |||||||||||||    
T  9852596 agagacacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatccacaatgatgaaagagctgtcaaatatt 9852497  T
Q  114 ggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||||  ||||   || ||||||||||||||||    
T  9852496 ggagaccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgttcttaatttgggaggtaga 9852423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 10431257 - 10431377
Alignment:
Q  18 acacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||  |||||||||||||||||||||||||    
T  10431257 acacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttgaattgtcaataaggaaagtgctgtcaaatattggag 10431356  T
Q  118 accccattccgtaactggcgg 138  Q
    ||||||||||||||| |||||    
T  10431357 accccattccgtaaccggcgg 10431377  T

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Target: chr3; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 10034856 - 10034745
Alignment:
Q  18 acacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  10034856 acacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaatactcaagttggaaagtgctgtcaaatattggag 10034757  T
Q  118 accccattccgt 129  Q
    ||||||||||||    
T  10034756 accccattccgt 10034745  T

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Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 10583366 - 10583197
Alignment:
Q  18 acacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||   ||||| ||||| | || || |||    
T  10583366 acacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcatcctttccaatactccagcttgaaagagctgttagatctttgag 10583267  T
Q  118 accccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||  ||||  ||||||||||| ||||||||    
T  10583266 accccattccgtaaccggcggtgctgttttttgggtaaaaatcacaattgatcgtaatttgagaggtaga 10583197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 10361012 - 10361125
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatat 112  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||  ||||| |||||||||||||||||||    
T  10361012 cagagacacaagggagacgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctttccaatacccaagttggaaagtgctgtcaaatat 10361111  T
Q  113 tggagaccccattc 126  Q
    ||||||||||||||    
T  10361112 tggagaccccattc 10361125  T

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Target: chr3; HSP #11
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 10373059 - 10373182
Alignment:
Q  19 cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||  |||| |||||   || || ||||| | || |||||||    
T  10373059 cacaagggagatgggtagcaacgactccttcatcaaggtgttaactatatcatcatcctttctaatactcaagcttgacagagctgttagatcttggaga 10373158  T
Q  119 ccccattccgtaactggcggtgtt 142  Q
    |||||||||||||| |||||||||    
T  10373159 ccccattccgtaaccggcggtgtt 10373182  T

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Target: chr3; HSP #12
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 10129775 - 10129648
Alignment:
Q  18 acacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||| ||||    ||||| || ||||||| ||| ||    
T  10129775 acacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctttccaatactcaatcttgaaagagcggtcaaatcttgaag 10129676  T
Q  118 accccattccgtaactggcggtgttgtt 145  Q
    ||||||||| || || ||||||| ||||    
T  10129675 accccattctgtcacaggcggtgctgtt 10129648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 10091655 - 10091481
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatat 112  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||| |  | | || |||  |||| | |||||| |  || | || |    
T  10091655 cagagacacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctctttaatcatcaattcggaaagagtggttagatct 10091556  T
Q  113 tggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    |||||||||||||||||||| ||||||||| |||||| || | ||||  ||||   | |||||||||||||||||    
T  10091555 tggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtaga 10091481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 10198537 - 10198363
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatat 112  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||| |  | | || |||  |||| | |||||| |  || | || |    
T  10198537 cagagacacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctctttaatcatcaattcggaaagagtggttagatct 10198438  T
Q  113 tggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    |||||||||||||||||||| ||||||||| |||||| || | ||||  ||||   | |||||||||||||||||    
T  10198437 tggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtaga 10198363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 10503432 - 10503378
Alignment:
Q  21 caagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacc 75  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10503432 caagggagatgggaagcaacgactccttcatcaaggtgttaaatatatcatcacc 10503378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 10192954 - 10192883
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaat 84  Q
    ||||||||||||||||||||||||||||| ||| || | ||||||||||| ||||||| || | ||||||||    
T  10192954 cagagacacaagggagatgggtagcaacggctcttttaccaaggtgttaactatatcaccatccttttcaat 10192883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 10086034 - 10085963
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaat 84  Q
    |||||||||||||||||||| |||||||| ||| || | ||||||||||| ||||||| || | ||||||||    
T  10086034 cagagacacaagggagatggttagcaacggctcttttaccaaggtgttaactatatcaccatccttttcaat 10085963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 10531638 - 10531579
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatca 73  Q
    |||||||||||||||||||| ||||| ||||| |||| || |||||||| ||||||||||    
T  10531638 agagacacaagggagatgggaagcaatgactcgttcagcacggtgttaactatatcatca 10531579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 10680436 - 10680377
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatca 73  Q
    |||||||||||||||||||| ||||| ||||| |||| || |||||||| ||||||||||    
T  10680436 agagacacaagggagatgggaagcaatgactcgttcagcacggtgttaactatatcatca 10680377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 11779199 - 11779367
Alignment:
Q  19 cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggaga 118  Q
    |||||||||||| ||||||||| | ||||||||||||||| | | ||||| |||| ||||| |||||  ||  |  ||||| |  ||    | |||||||    
T  11779199 cacaagggagataggtagcaacaaatccttcatcaaggtggtgactatattatcatcatttccaataaccagttctgaaagagtggtttggttttggaga 11779298  T
Q  119 ccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    |||||||| |||||||| ||||||||| |||||| | || |  ||||  || |||||||||||||||||    
T  11779299 ccccattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaatttgggaggtaga 11779367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 11772086 - 11771953
Alignment:
Q  19 cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggaga 118  Q
    |||||||||||| || |||||| |||| |||||||||||| | | ||||| |||| ||||| |||||  ||| |  ||||| |  ||    | |||||||    
T  11772086 cacaagggagataggcagcaacaactctttcatcaaggtggtgactatattatcatcatttccaataaccaatttcgaaagagtggtttggttttggaga 11771987  T
Q  119 ccccattccgtaactggcggtgttgttttttggg 152  Q
    |||||||| |||||||| ||||||||| ||||||    
T  11771986 ccccattctgtaactggtggtgttgttatttggg 11771953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 13852654 - 13852699
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtg 58  Q
    |||||||| |||||||||||||| ||||  ||||||||||||||||    
T  13852654 cagagacaaaagggagatgggtatcaacagctccttcatcaaggtg 13852699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 54819 - 54987
Alignment:
Q  19 cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatattggaga 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||  |||  |  |||| ||||||||||||||||||    
T  54819 cacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatacacaaaaaaaaaagagctgtcaaatattggaga 54918  T
Q  119 ccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    |||||||||||||| ||||||| |||||||| |||||||||  ||||  || |||||||| ||||||||    
T  54919 ccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttgagaggtaga 54987  T

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Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 11487887 - 11487757
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||   | ||||||||||    ||||| || |||| || |    
T  11487887 cagagacacaagggagatgggtagcaacgactgcttcatcaaggtgttaagtatatcatcacccactccaatagtcaaccgtgaaagagcggtcagatct 11487788  T
Q  113 tggagaccccattccgtaactggcggtgttg 143  Q
    | |||||||||||||||||| ||||| ||||    
T  11487787 ttgagaccccattccgtaacaggcggcgttg 11487757  T

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Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 26909745 - 26909572
Alignment:
Q  14 agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccattttcaatagtcaagtaggaaagtgctgtcaaatatt 113  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| | ||  |||||||| |  ||||| |  || | || ||    
T  26909745 agagaaacaagggagatgggtagcaacaactccttcatcaaggtgttaaatgtatcatgaccctctttgatagtcaattctgaaagagtggttagatctt 26909646  T
Q  114 ggagaccccattccgtaactggcggtgttgttttttgggtagaaatgtcaatgaatcgtaatttgggaggtaga 187  Q
    |||||| |||||||||||| | |||||||||| |||| |   ||| ||||||  || |||| ||||||||||||    
T  26909645 ggagacaccattccgtaacagacggtgttgttatttgagaccaaaggtcaattgattgtaagttgggaggtaga 26909572  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 17850134 - 17850194
Alignment:
Q  13 cagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatca 73  Q
    ||||||||| ||||| || || |||||||||||||||||||||||||| | ||||||||||    
T  17850134 cagagacacgagggatattgggagcaacgactccttcatcaaggtgttcactatatcatca 17850194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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