View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12959_low_1 (Length: 779)

Name: NF12959_low_1
Description: NF12959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12959_low_1
NF12959_low_1
[»] chr7 (5 HSPs)
chr7 (16-673)||(48635348-48636012)
chr7 (682-733)||(9805434-9805485)
chr7 (682-741)||(35081601-35081660)
chr7 (683-741)||(35080283-35080341)
chr7 (682-732)||(23621990-23622040)
[»] chr2 (4 HSPs)
chr2 (682-741)||(27552451-27552510)
chr2 (682-741)||(12812835-12812894)
chr2 (683-733)||(27553815-27553865)
chr2 (686-731)||(10853155-10853200)
[»] chr4 (4 HSPs)
chr4 (682-741)||(8747690-8747749)
chr4 (682-741)||(8749046-8749105)
chr4 (683-741)||(33997896-33997954)
chr4 (682-741)||(8896953-8897012)
[»] chr5 (5 HSPs)
chr5 (682-741)||(124529-124588)
chr5 (683-741)||(5504136-5504194)
chr5 (682-741)||(5502917-5502975)
chr5 (683-739)||(3598924-3598980)
chr5 (682-741)||(121348-121407)
[»] chr3 (7 HSPs)
chr3 (682-741)||(51220602-51220661)
chr3 (683-741)||(10584082-10584140)
chr3 (683-741)||(32829740-32829798)
chr3 (683-739)||(26722533-26722589)
chr3 (682-733)||(53157184-53157234)
chr3 (683-741)||(51219462-51219520)
chr3 (682-731)||(32831100-32831149)
[»] chr1 (3 HSPs)
chr1 (683-741)||(46312065-46312123)
chr1 (682-731)||(3000223-3000272)
chr1 (683-733)||(46525850-46525900)
[»] chr8 (3 HSPs)
chr8 (682-731)||(13883878-13883927)
chr8 (682-739)||(38612218-38612275)
chr8 (682-739)||(38613419-38613476)
[»] chr6 (1 HSPs)
chr6 (686-741)||(22417661-22417716)


Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Original strand, 48635348 - 48636012
Alignment:
Q  16 cataatcaatattgaaaactagtactgttcttcaaaggccaattatcacccnnnnnnnnnnnnnncgagtatgtagaggagatggactaatctata---- 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||              | |||||||||||||||||||||||||||||        
T  48635348 cataatcaatattgaaaactagtactgttcttcaaaggccaattatcacccaaaaaaagaaaaaacaagtatgtagaggagatggactaatctatatata 48635447  T
Q  112 ------tatattaaggtgaaagttgcacggaatggaattgaatgtagtgtatagcaagttaacgtacgtgtgggtggggaggctcgaaaactaaggcaaa 205  Q
          |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48635448 tatatatatattaaggtgaaagttgcacggaatggaatggaatgtagtgtataggaagttaacgtacgtgtgggtggggaggctcgaaaactaaggcaaa 48635547  T
Q  206 aagagagatttgcaaattaagttggaagggagggagggggagtgaatgttgttaatttaacttaataatgcaataaaatagtgtccttggtcttacttgt 305  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635548 aaaagagatttgcaaattaagttggaagggagggagggggagtgaatgttgttaatttaacttaataatgcaataaaatagtgtccttggtcttacttgt 48635647  T
Q  306 attgtcaatgaaatcaaggtggatatataatatcaaaagatttattagaaaagtatcaaaggtgagcataaaaataggaacagaacagtgatcaaggtgg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635648 attgtcaatgaaatcaaggtggatatataatatcaaaagatttattagaaaagtatcaaaggtgagcataaaaataggaacagaacagtgatcaaggtgg 48635747  T
Q  406 atataagattttgttcattcttcctttaattacattctctttatgaccgtcgacaaagatcaatcaggatacaattgtttattttttaa-gggttgaaca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48635748 atataagattttgttcattcttcctttaattacattctctttatgaccgtcgacaaagatcaatcaggatacaattgtttattttttaaggggttgaaca 48635847  T
Q  505 tcgaagttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggcttgatttcattcattcattcataaacaatgcattcagtgtacgta 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||    
T  48635848 tcgaagttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggcttgatttcattcattcattcataaacaatgcattcatt----gta 48635943  T
Q  605 cctcctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagtacagttttagcaa 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635944 cctcctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagtacagttttagcaa 48636012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 682 - 733
Target Start/End: Complemental strand, 9805485 - 9805434
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 733  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  9805485 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggc 9805434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 35081660 - 35081601
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||    
T  35081660 aggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaat 35081601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 741
Target Start/End: Original strand, 35080283 - 35080341
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||||  |||||||    
T  35080283 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 35080341  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 732
Target Start/End: Complemental strand, 23622040 - 23621990
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttgg 732  Q
    ||||||||||||||||||| || | ||| ||||||||||||| ||||||||    
T  23622040 aggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 27552451 - 27552510
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27552451 aggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 12812835 - 12812894
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||    
T  12812835 aggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 733
Target Start/End: Complemental strand, 27553865 - 27553815
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 733  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| |||||||||    
T  27553865 ggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggc 27553815  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 731
Target Start/End: Complemental strand, 10853200 - 10853155
Alignment:
Q  686 taaactacagttttgaccccttaaatttgccaatgttgtgattttg 731  Q
    |||||||||||||||||||||||| |||  |||||||| |||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttg 10853155  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 8747690 - 8747749
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  8747690 aggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8747749  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 8749105 - 8749046
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||    
T  8749105 aggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 33997954 - 33997896
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||||| ||| ||||| ||||||| ||||||| | |||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaat 33997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 8897012 - 8896953
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||| || ||| ||||||||||||  ||||||||  |||||||    
T  8897012 aggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 124588 - 124529
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||    
T  124588 aggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 5504194 - 5504136
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaat 5504136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 5502917 - 5502975
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||| ||||||| |||||||||||||  |||||||| |||||||    
T  5502917 aggctaaactacagttttga-cccttaagtttgccaatgttgcaattttggccccctaat 5502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 739
Target Start/End: Complemental strand, 3598980 - 3598924
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 739  Q
    ||||||||||||||||||  ||| ||||||| ||||||||| ||||||||| |||||    
T  3598980 ggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 121348 - 121407
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||| |  |||||||||||||||||  |||||| | |||||||    
T  121348 aggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaat 121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 682 - 741
Target Start/End: Complemental strand, 51220661 - 51220602
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||| || |||||||    
T  51220661 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat 51220602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 10584140 - 10584082
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 741
Target Start/End: Original strand, 32829740 - 32829798
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| |||||||    
T  32829740 ggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaat 32829798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 739
Target Start/End: Original strand, 26722533 - 26722589
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 739  Q
    |||||||||||||||||| |||| ||| ||| ||||||||| ||||||||| |||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 733
Target Start/End: Complemental strand, 53157234 - 53157184
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 733  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||| ||||    
T  53157234 aggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggc 53157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 741
Target Start/End: Original strand, 51219462 - 51219520
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||| | ||| |||| ||||||||  |||||||| |||||||    
T  51219462 ggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 731
Target Start/End: Complemental strand, 32831149 - 32831100
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 731  Q
    |||||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  32831149 aggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 741
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||||||| |||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 731
Target Start/End: Complemental strand, 3000272 - 3000223
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 731  Q
    |||||||||||||||||||||||||||| ||||  ||||||| |||||||    
T  3000272 aggctaaactacagttttgaccccttaattttgttaatgttgcgattttg 3000223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 733
Target Start/End: Complemental strand, 46525900 - 46525850
Alignment:
Q  683 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 733  Q
    |||||| ||||||||||| |||| ||| ||||||||||||| |||||||||    
T  46525900 ggctaatctacagttttggccccctaagtttgccaatgttgcgattttggc 46525850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 682 - 731
Target Start/End: Complemental strand, 13883927 - 13883878
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 731  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  13883927 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Original strand, 38612218 - 38612275
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 739  Q
    |||||||||| ||||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  38612218 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 739
Target Start/End: Complemental strand, 38613476 - 38613419
Alignment:
Q  682 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 739  Q
    |||||||||| ||||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  38613476 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 741
Target Start/End: Original strand, 22417661 - 22417716
Alignment:
Q  686 taaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 741  Q
    |||||||||||||||||||| ||| ||||| ||||||  ||||||||| |||||||    
T  22417661 taaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

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