View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12959_low_4 (Length: 308)
Name: NF12959_low_4
Description: NF12959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12959_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 44154520 - 44154316
Alignment:
| Q |
106 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgatt--- |
202 |
Q |
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| T |
44154520 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgattaat |
44154421 |
T |
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| Q |
203 |
-----gattgatggatgctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgat |
297 |
Q |
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| T |
44154420 |
tgattgattgatggatgctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgat |
44154321 |
T |
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| Q |
298 |
gtcca |
302 |
Q |
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|||| |
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| T |
44154320 |
ttcca |
44154316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 40899237 - 40899041
Alignment:
| Q |
106 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatgtttgattgat |
205 |
Q |
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| T |
40899237 |
tgaattcaaggatgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttggtaattaatttttgattgat |
40899138 |
T |
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| Q |
206 |
tgatggatgctaatgatgcagtaacagtagaaggagaatattatgtgttcaaagacaagtcaaactccatcaaatacatgacccctgatgatgtcca |
302 |
Q |
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| T |
40899137 |
tgatggatgctaacgatgctgtaacagtaaaaggagaatattatgtgttcaaagacaaatcaaactccatcaaatgcatgacccctgatgatttcca |
40899041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40899342 - 40899265
Alignment:
| Q |
1 |
agcagattatggctttgattatgaaagtattactactcttcttgctggcatatttcatttgttaatgtttcatcacgc |
78 |
Q |
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| T |
40899342 |
agcagattatggctttgattatgaaagtattactactcttcttgctggcatatttcatttgttaatgtttcatcacgc |
40899265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 44154623 - 44154548
Alignment:
| Q |
3 |
cagattatggctttgattatgaaagtattactactcttcttgctggcatatttcatttgttaatgtttcatcacgc |
78 |
Q |
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| T |
44154623 |
cagattatggctttgattatgaaagtattactactcttcttgctggcatatttcattttttaatgtttcatcacgc |
44154548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 40893762 - 40893829
Alignment:
| Q |
118 |
tgttctttctgatttcatttgtttgaatttagaatgtttcattatgatttttgaatgtgttgttgttg |
185 |
Q |
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| T |
40893762 |
tgttgtttctgatttcatttgttttagtttagatggtttaattatgatttttgaatgtgttgttgttg |
40893829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 44154303 - 44154258
Alignment:
| Q |
25 |
aagtattactactcttcttgctggcatatttcatttgttaatgttt |
70 |
Q |
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||||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
44154303 |
aagtattactactcttctttctgacttatttcatttgttaatgttt |
44154258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 40899028 - 40898983
Alignment:
| Q |
25 |
aagtattactactcttcttgctggcatatttcatttgttaatgttt |
70 |
Q |
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| T |
40899028 |
aagtattactactcttctttctgacttatttcagttgttaatgttt |
40898983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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