View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295R-Insertion-2 (Length: 582)
Name: NF1295R-Insertion-2
Description: NF1295R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295R-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 16 - 582
Target Start/End: Complemental strand, 49665255 - 49664689
Alignment:
| Q |
16 |
ctcctagctactttatgtgcaaaagggaccaggaatttgattttctaaagtaagttgaagcttgtctacaacttgtttttacactcttcacagtgttcac |
115 |
Q |
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| T |
49665255 |
ctcctatctactttatgtgcaaaagggaccaggaatttgattttctaaagtaagttgaagcttgtctacaacttgtttttacactcttcacagtgttcac |
49665156 |
T |
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| Q |
116 |
agtataataacaccgactttacgtgtgtgataagatacaccaggtgggaaatgaacatgaatggaaataaaagtgggaacgcatgaaatctagattttgg |
215 |
Q |
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| T |
49665155 |
agtataataacaccaactttacgtgtgtgataagatacaccaggtgggaaatgaacatgaatggaaataaaagtgggaacgcatgaaatctagattttgg |
49665056 |
T |
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| Q |
216 |
catttactgaagtaagaccaatttcttgctcaagttacaatactgctatttgaataaagacaaagacttgacatcacaaacttcgcatctgaatcttctt |
315 |
Q |
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| T |
49665055 |
catttactgaagtaagaccaatttcttgctcaagttacaatactcctatttgaataaagacaaagacttgatgtcacaaacttcgcatctgaatcttctt |
49664956 |
T |
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| Q |
316 |
ctattggtcttagaggcgccaaaaccgtctataccacgtaaaatacgataataaacacgaagaaaactagtagagttacgttatatgcatggaaactaag |
415 |
Q |
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| T |
49664955 |
ctattggtcttagaggcgccaaaaccgtctaaaccacgtaaaatacgataataaacacgaagaaaactagtagagttacgttatatgcatggaaactaag |
49664856 |
T |
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| Q |
416 |
attgaaaaatatcaaaactgacaggtctagattctggagttagtccatgtagaaattttgaaagttaatgaagtggggccatgtggttgaaatactggaa |
515 |
Q |
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| T |
49664855 |
attgagaaatatcaaaactgagaggtctagattctggagttagtccatgaagaaattttaaaagttaataaagtggggccatgtggttgaaatactggaa |
49664756 |
T |
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| Q |
516 |
aaggatgggagnnnnnnncaagcagcaatttgacgttgaaagagtcttggggaataagacacactaa |
582 |
Q |
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| T |
49664755 |
aaggatgggagaaaaaaacaagcagcaatttgacgttgaaagagtcttggggaataagacacactaa |
49664689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 395 - 564
Target Start/End: Original strand, 3217937 - 3218106
Alignment:
| Q |
395 |
gttatatgcatggaaactaagattgaaaaatatcaaaactgacaggtctagattctggagttagtccatgtagaaattttgaaagttaatg-aagtgggg |
493 |
Q |
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| T |
3217937 |
gttatctgcatggaaactaagattgagaaatataaaaactgagaggtctagtttctggagtgagtccatgtagagattttg-aagttaaagaaagtgggg |
3218035 |
T |
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| Q |
494 |
ccatgtggttgaaatactggaaaaggatgggagnnnnnnncaagcagcaatttgacgttgaaagagtcttg |
564 |
Q |
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| T |
3218036 |
ccttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaatttgatgttgaaagagtcttg |
3218106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 247 - 450
Target Start/End: Original strand, 3222968 - 3223169
Alignment:
| Q |
247 |
aagttacaatactgctatttgaataaagacaaagacttgacatcacaaacttcgcatctgaatcttcttctattggtcttagaggcgccaaaaccgtcta |
346 |
Q |
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| T |
3222968 |
aagttactaaacttctatttgaataaagacaaagaattgactt-ataaactacacatccgagtcttcttttactggttttggagggcccaaaatcgtcta |
3223066 |
T |
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| Q |
347 |
taccacgtaaaat-acgataataaacacgaagaaaactagtagagttacgttatatgcatggaaactaagattgaaaaatatcaaaactgacaggtctag |
445 |
Q |
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| T |
3223067 |
aaccacgtaaaattaggataataagcactacaaaaactagtag--ttatcttatctgcatggaaactaagattgagaaatatataaactgagaggtctag |
3223164 |
T |
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| Q |
446 |
attct |
450 |
Q |
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|||| |
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| T |
3223165 |
cttct |
3223169 |
T |
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