View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295R-Insertion-3 (Length: 496)
Name: NF1295R-Insertion-3
Description: NF1295R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295R-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 1817205 - 1817689
Alignment:
| Q |
7 |
cacaatcaattaattaaactgcaaaaacaaaaacagtggtacgatattatgctttgtttgttacctgtgcagcctccaggaaggtatggatttccttcaa |
106 |
Q |
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| T |
1817205 |
cacaatcaattaattaaactgcaaaaacaaaaacagtggtacgatattatgctttgtttgttacctgtgcagcctccaggaaggtatggatttccttcaa |
1817304 |
T |
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| Q |
107 |
aaccttgtaaacacttgcatctgtaaccatcataatctggatcgtcatcgacacattcactatttttcttgcaggcgtagctatttgtagtgtgagctat |
206 |
Q |
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| T |
1817305 |
aaccttgtaaacacttgcatctgtaaccatcataatctggatcgtcatcgacacattcactatttttcttgcaggcgtagctatttgtagtgtgagctat |
1817404 |
T |
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| Q |
207 |
ttgacatgattcatttgtaatagcccaattaataaccaaggggaaagtttcattaggtagattatttatatggtctacagaaaatttataggatccttgt |
306 |
Q |
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| T |
1817405 |
ttgacatgattcatttgtaatagcccaattaataaccaaggggaaagtttcattaggtagattatttatatggtctacagaaaatttataggatccttgt |
1817504 |
T |
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| Q |
307 |
tttgcaataaaggaatagctacaagaattttccttagatagtgtagaagttgggaatttaaatgcttcaattgtgatatttttcatgatagaaggaatat |
406 |
Q |
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| T |
1817505 |
tttgcaataaaggaatagctacaagaattttccttagatagggtagaagttgggaatttaaatgcttcaattgtgatatttttcatactagaaggaatat |
1817604 |
T |
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| Q |
407 |
ccacctggcaacaccctatacctgtgcattttccagtgttattcccaaatactattttaggatcaaaatcataacatcttgttaa |
491 |
Q |
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| T |
1817605 |
ccacttggcaacaccctaaacctgtgcattttccagtgttattcccaattactattttaggtttaaaatcataacatcttgttaa |
1817689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 64 - 491
Target Start/End: Complemental strand, 1855929 - 1855502
Alignment:
| Q |
64 |
ttgttacctgtgcagcctccaggaaggtatggatttccttcaaaaccttgtaaacacttgcatctgtaaccatcataatctggatcgtcatcgacacatt |
163 |
Q |
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| T |
1855929 |
ttgttacctctacagcctccgggaacgtatggatttccttcaaaacctgccaaacacttgcatctgtaaccgtcataatctgaatctttatcaacacatt |
1855830 |
T |
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| Q |
164 |
cactatttttcttgcaggcgtagctatttgtagtgtgagctatttgacatgattcatttgtaatagcccaattaataaccaaggggaaagtttcattagg |
263 |
Q |
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| T |
1855829 |
cactattttccttgcaggcatagctatttgtagtttgggctattcgacatgattcatttgtaacaacccaattaacaaccatagggaaagtgttataagg |
1855730 |
T |
|
| Q |
264 |
tagattatttatatggtctacagaaaatttataggatccttgttttgcaataaaggaatagctacaagaattttccttagatagtgtagaagttgggaat |
363 |
Q |
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| T |
1855729 |
cagtttcttaatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaat |
1855630 |
T |
|
| Q |
364 |
ttaaatgcttcaattgtgatatttttcatgatagaaggaatatccacctggcaacaccctatacctgtgcattttccagtgttattcccaaatactattt |
463 |
Q |
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| T |
1855629 |
ttaaatgcttgtatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaattaccattt |
1855530 |
T |
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| Q |
464 |
taggatcaaaatcataacatcttgttaa |
491 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
1855529 |
tagtatcaaaatcataacatcttgttaa |
1855502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 303 - 491
Target Start/End: Complemental strand, 37567171 - 37566977
Alignment:
| Q |
303 |
ttgttttgcaataaaggaatagctacaagaattttccttagatagtgtagaagttgggaatttaaatgcttcaattgtgatatttttcatgatagaagga |
402 |
Q |
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| T |
37567171 |
ttgttttgcaataaaggaatagctacaagaattttccatagacagtgtagaagttgggaatttaaatgtttcaattgtgatatttttcatactagaagga |
37567072 |
T |
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| Q |
403 |
atatccacctggcaacaccctata------cctgtgcattttccagtgttattcccaaatactattttaggatcaaaatcataacatcttgttaa |
491 |
Q |
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| T |
37567071 |
atatccacttggcaacaccctaaacctaggcctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaa |
37566977 |
T |
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