View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295R-Insertion-4 (Length: 463)
Name: NF1295R-Insertion-4
Description: NF1295R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295R-Insertion-4 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 25669742 - 25669288
Alignment:
| Q |
8 |
ataaagtgtgttagttgtgtttcttctgattaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttgga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||| || |||||||| |
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| T |
25669742 |
ataaagtgtgttagttgtgtttcttctgattaggatttggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctttgga |
25669643 |
T |
|
| Q |
108 |
acgacattcaacagattgtcagtgacactagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaactggctgcttgtatggcta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||| |||||||||||||| |
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| T |
25669642 |
acgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttg-ttgttataacgtttcacgccagaactggatgcttgtatggcta |
25669544 |
T |
|
| Q |
208 |
gtttgctttggagtttatggaagcaccactacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttgga |
307 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| | |||| ||| || |||||||||| | |||||||||||||||| |
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| T |
25669543 |
gtttgctttggagtttctggaagcaccactacctcaaagtgtaggatgatgttacataaatagctgcgcatgtagttgatacaactcatcatttgttgga |
25669444 |
T |
|
| Q |
308 |
ggagtggacacttgcaaacacaaccaccaacgatgctcgtcaaaattagccctgttctatcactcctctatgcttcaacttcggttggaggattataaaa |
407 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
25669443 |
cgagtggacacttgcaaacgtaaccaccaacgatgctcgtcaaaattaaccccgtgctaccactcctctatgcttcaactacggttggaggattggaaaa |
25669344 |
T |
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| Q |
408 |
tgatctacatcagcagagccaaacactccagttggtgcttcaacttctttcctaga |
463 |
Q |
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|||||||||||| |||| ||||| || ||||||||||||||||||||||||| |
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| T |
25669343 |
tgatctacatcaacagatgtgaacaccccgattggtgcttcaacttctttcctaga |
25669288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 359
Target Start/End: Complemental strand, 25828210 - 25827865
Alignment:
| Q |
12 |
agtgtgttagttgtgtttcttctgattaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaacga |
111 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| || | |||||||||||| |
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| T |
25828210 |
agtgtgttggttgtgtttcttatgattaggatatggctcacatgttttttacttgcccatttacaatgtaagtttggattatggctgtcctttggaacga |
25828111 |
T |
|
| Q |
112 |
cattcaacagattgtcagtgacactagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagttt |
211 |
Q |
| |
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||||||| ||||||||||||| | ||||||||||||||||| |||||||||| || ||||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
25828110 |
cattcaatagattgtcagtgatagtagtttggaagcaaaatcgatctttttgttt-ttacaacgtttcacgccagaactggctacttgtatggctagttt |
25828012 |
T |
|
| Q |
212 |
gctttggagtttatggaagcaccactacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggag |
311 |
Q |
| |
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| || |||||||| |||||||| ||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25828011 |
gtttcggagtttacggaagcac-actacctcaaagtgtaggatgatgttaaaaagatagttgctcaagtagttgataaagctcatcatttgttggaggag |
25827913 |
T |
|
| Q |
312 |
tggacacttgcaaacacaaccaccaacgatgctcgtcaaaattagccc |
359 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
25827912 |
tggacacttgcaaacgcaaccaccaccgatgctcgtcaaaattagccc |
25827865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 25472437 - 25472103
Alignment:
| Q |
12 |
agtgtgttagttgtgtttcttctgattaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaacga |
111 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| | || || | ||||||||||| | |
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| T |
25472437 |
agtgtgttagttgtgtttcttctaattaggatttggctcacttgtcttttacttgcccatttacattgcaagtttggttc-tggctggcctttggaacaa |
25472339 |
T |
|
| Q |
112 |
cattcaacagattgtcagtgacactagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagttt |
211 |
Q |
| |
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||||||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
25472338 |
cattcaatagattgtcaatgacactagtttggc---------gatctttttg-taattacaatgtttcacaccagaactggctacttgtatggctagttt |
25472249 |
T |
|
| Q |
212 |
gctttggagtttatggaagcaccactacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggag |
311 |
Q |
| |
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|||||||||||||| |||||||| || | |||| ||| | ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
25472248 |
gctttggagtttatcgaagcaccgctgccacaaaatgtagaatgatgttacaaagataattgctcaagtagttggtaaagctcatcatttgttgtaggag |
25472149 |
T |
|
| Q |
312 |
tggacacttgcaaacacaaccaccaacgatgctcgtcaaaattagc |
357 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25472148 |
tggacacttgcaaacgcaaccaccaacgatgctcgtcaaaattagc |
25472103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 25429743 - 25429565
Alignment:
| Q |
10 |
aaagtgtgttagttgtgtttcttctgattaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaac |
109 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| || |||||||| |||||| |||| ||||||| ||| | | | |||||||| |
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| T |
25429743 |
aaagtgtgttagttgtgtttcttctgattaagatttggctcacgtgtcttttacttcgccatttgcaatccaagtttggattgaggctgacatttggaac |
25429644 |
T |
|
| Q |
110 |
gacattcaacagattgtcagtgacactagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaac |
189 |
Q |
| |
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||||||||||||| ||||| ||||||||||||| | || || |||||||||| |||||||||| ||||| | |||||| |
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| T |
25429643 |
gacattcaacagactgtcactgacactagtttgacaacagaagcgatctttttg-ttgttacaacgtttcacggcagaac |
25429565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 24889169 - 24889301
Alignment:
| Q |
10 |
aaagtgtgttagttgtgtttcttctgattaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| || |||||||| |||||| |||| ||||||| ||| | | | |||||||| |
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| T |
24889169 |
aaagtgtgttagttgtgtttcttctgattaagatttggctcacgtgtcttttacttcgccatttgcaatccaagtttggattgaggctgacatttggaac |
24889268 |
T |
|
| Q |
110 |
gacattcaacagattgtcagtgacactagtttg |
142 |
Q |
| |
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||||||||||||| ||||| ||||||||||||| |
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| T |
24889269 |
gacattcaacagactgtcactgacactagtttg |
24889301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 25472051 - 25471995
Alignment:
| Q |
406 |
aatgatctacatcagcagagccaaacactccagttggtgcttcaacttctttcctag |
462 |
Q |
| |
|
|||||||||||| |||||| | |||||||| |||||||||||||||||||||||| |
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| T |
25472051 |
aatgatctacattagcagacacgaacactccgattggtgcttcaacttctttcctag |
25471995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 154 - 345
Target Start/End: Original strand, 25983906 - 25984096
Alignment:
| Q |
154 |
gatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagtttgctttggagtttatggaagcaccactacttcaaagtgtggga |
253 |
Q |
| |
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|||||||||| || ||||||| ||||| ||| || ||||||||| | |||| ||| ||| ||||||||||||||||| ||||| || |||||||||| || |
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| T |
25983906 |
gatctttttg-ttattacaacgtttcacgcctgagctggctgctcgcatggttagcttgttttggagtttatggaagtaccacaacctcaaagtgtgaga |
25984004 |
T |
|
| Q |
254 |
tgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccaccaacgatgctc |
345 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| | |||||||||||||||| ||||||||| |||||||| || ||||||||| ||||| |
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| T |
25984005 |
tgatgttacagagacaactgctcaagtagttgatacaactcatcatttgttggaagagtggacatttgcaaacgcagccaccaacgttgctc |
25984096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 40518832 - 40518935
Alignment:
| Q |
214 |
tttggagtttatggaagcaccactacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcat-ttgttggaggagt |
312 |
Q |
| |
|
|||||| |||||||||| ||| | | ||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||||| || ||||||||||| | |
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| T |
40518832 |
tttggattttatggaaggaccgcaatctcaaagtgtgggatgatgttacatagacggttgctcaaatagttgacatagctcattatattgttggaggatt |
40518931 |
T |
|
| Q |
313 |
ggac |
316 |
Q |
| |
|
|||| |
|
|
| T |
40518932 |
ggac |
40518935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 41837635 - 41837728
Alignment:
| Q |
241 |
tcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccac |
334 |
Q |
| |
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||||||||||| ||||||||| |||| || ||||||| || |||| |||||||||| |||||| |||| || || |||| |||||||||||| |
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| T |
41837635 |
tcaaagtgtggtatgatgttagtgagacagatgctcaaatacttgacaaagctcatcgattgttgaaggattgaacgcttgtaaacacaaccac |
41837728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 41837410 - 41837475
Alignment:
| Q |
14 |
tgtgttagttgtgtttcttctgattaggatttggctcacatgctttttacttgcccatttacaatg |
79 |
Q |
| |
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||||||||||||| ||||| ||| |||| ||| ||| |||| ||||||||||||||||| ||||| |
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| T |
41837410 |
tgtgttagttgtgattctttcgatgaggacttgactcgcatgttttttacttgcccatttgcaatg |
41837475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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