View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295R-Insertion-5 (Length: 335)
Name: NF1295R-Insertion-5
Description: NF1295R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295R-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 24949678 - 24950004
Alignment:
| Q |
9 |
aatctaaacctaactattcatctagataaccataggaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaa |
108 |
Q |
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| T |
24949678 |
aatctaaacctaactattcatctagataaccataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaa |
24949777 |
T |
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| Q |
109 |
ctaactaattacatgatacttcattattttgcataacctgcagtatattgaggagatagctataatgatatacagaatcagagtgaaaaatgaaatttaa |
208 |
Q |
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| T |
24949778 |
ctaactaattacatgatacttcattactttgcataacctgcagtatattgaggagatagctataatgatatacagaatcagagagaaaaatgaaatttaa |
24949877 |
T |
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| Q |
209 |
aatcaaaagagaatggtaaatgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgta |
308 |
Q |
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| T |
24949878 |
aatcaaaagagaatggtaaatgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgta |
24949977 |
T |
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| Q |
309 |
agtgttaaagtcattgtaagttgactt |
335 |
Q |
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| T |
24949978 |
agtgttaaagtcattgtaagttgactt |
24950004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 24366741 - 24366802
Alignment:
| Q |
66 |
aggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
127 |
Q |
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| T |
24366741 |
aggcctgaatatgagcagtgtcgattactgcattaactaataactacctaattacatgatac |
24366802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 3000660 - 3000595
Alignment:
| Q |
237 |
aagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagact |
304 |
Q |
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| T |
3000660 |
aagagctcatcgttgagctagaccggaaagatgaacaccgag--ctaagggcgaaatagcccgagact |
3000595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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