View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295_high_1 (Length: 849)

Name: NF1295_high_1
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295_high_1
NF1295_high_1
[»] chr4 (1 HSPs)
chr4 (27-833)||(36933326-36934114)


Alignment Details
Target: chr4 (Bit Score: 732; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 27 - 833
Target Start/End: Complemental strand, 36934114 - 36933326
Alignment:
Q  27 attcataataactaatcttctttggtccagcacccatttggaattcatcatccatatcctgatcagaagtggtttctgaagtaggttcatcttcttttcc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36934114 attcataataactaatcttctttggtccagcacccatttggaattcatcatccatatcctgatcagaagtggtttctgaagtaggttcatcttcttttcc 36934015  T
Q  127 tttgttcttcttccacaagaaaatgatcaaaattgctactaaactccaagacaaacatacaccaccaactgccaatccctcccacaatttagtcttcctt 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  36934014 tttgttcttcttccacaagaaaatgattaaaattgctactaaactccaagacaaacatacaccaccaactgccaatccctcccacaatttagtcttcc-- 36933917  T
Q  227 aattttcttttcttcagaggatcaactacaaaataacttggttggcttgtactaaaagaccatgagagcagcatatgttcctcgttcacttttcctgttg 326  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36933916 ----------------gaggatcaactacaaaataacttggttggcttgtactaaaagaccatgagagcagcatatgttcctcgtccacttttcctgttg 36933833  T
Q  327 aagctgatatgccaaccttaacatactctggtaaatgctctcttagattaatgatgtgtgaaaagttctgtggctcttgccatgcgttcaatctgtatcc 426  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36933832 aagctgatatgccaaccctaacatactctggtaaatgctctcttagattaatgatgtgtgaaaagttctgtggctcttgccatgcgttcaatctgtatcc 36933733  T
Q  427 agtgaaagaaacattcagaacattatttctggatatgtattcgatgctacaattataaaccatcctttccgaaacatttgagaaccattcgatatttgtg 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36933732 agtgaaagaaacattcagaacattatttctggatatgtattcgatgctacaattataaaccatcctttccgaaacatttgagaaccattcgatatttgtg 36933633  T
Q  527 tcggacaccacagaattgatattcactcccacgtgggggaaccctgggtcccaaatatttttgtgcgtgtcaaactccactaacacaattgaatactcag 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36933632 tcggacaccacagaattgatattcactcccacgtgggggaaccctgggtcccaaatatttttgtgcgtgtcaaactccactaacacaattgaatactcag 36933533  T
Q  627 ttgagtttaaagcaacttcgtttgcaggcacaagaccaaaaccccctccacctcctatacgatttgcttttgtgagatttgagcttgctaggaagaatgc 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36933532 ttgagtttaaagcaacttcgtttgcaggcacaagaccaaaaccccctccacctcctatacgatttgcttttgtgagatttgagcttgctaggaagaatgc 36933433  T
Q  727 caaaccatctccataagaactgtgatttgaaaatatagtaaaagaaaacttggtcctaaagtcatacacttcatttgtgcttctgttataaagtttgata 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36933432 caaaccatctccataagaactgtgatttgaaaatatagtaaaagaaaacttcgtcctaaagtcatacacttcatttgtgcttctgttataaagtttgata 36933333  T

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