View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_high_12 (Length: 461)
Name: NF1295_high_12
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 585616 - 585367
Alignment:
| Q |
30 |
aaatataaatgactaattaaataacttaatcacctttaaaatcgttttaaaaagataagtattttaattaagaaatatctatcttttagaatcatatctt |
129 |
Q |
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| T |
585616 |
aaatataaatgactaattaaataacttaatcacctttaaaatcgttttaaaaagataagtattttaattaagaaatatctatcttttagaatcatatctt |
585517 |
T |
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| Q |
130 |
cacaaaatcttgttgtaaggaggaaaacatggacttagcacgtatttgtgatcacaaaaagcaacataaattgttgcatgaacaacaaacacatcgcaac |
229 |
Q |
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| T |
585516 |
cacaaaatcttgttgtaaggaggaaaacatggacttagcacgtaattgtgatcacaaaaagcaacataaattgttgcatgaacaacaaacacatcgcaac |
585417 |
T |
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| Q |
230 |
atcttgttgatttaaaagtaaattttataaagcaaatacacaatgcaaat |
279 |
Q |
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| T |
585416 |
atcttcttgatttaaaagtaaattttataaagcaaatacacaatgcaaat |
585367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 585368 - 585268
Alignment:
| Q |
325 |
attgcgggaagttaagtagattgaagaagcaatatttagttatctttggaaaaatttggccctttcaaaagtggtggttttccaactcgtttggagaagc |
424 |
Q |
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| T |
585368 |
attgcgggaagttaagtagattggagaagcaatatttagttatctttggaaaaatttggccctttcaaaagtggtggttttccaactcgtttggagaagc |
585269 |
T |
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| Q |
425 |
a |
425 |
Q |
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| T |
585268 |
a |
585268 |
T |
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