View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_high_16 (Length: 421)
Name: NF1295_high_16
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 22906088 - 22905681
Alignment:
| Q |
16 |
attgtaatagcagtgttaaagttcctatttaagagttctttaatggcagaagctc--gtgttgagtcactgtgaattataccactggttgttattatttg |
113 |
Q |
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| T |
22906088 |
attgtaatagcagtgttaaagttcctatttaagagttctttaatggaagaagctcttgtgttgagtccctgtgaattataccactggttgttattatttg |
22905989 |
T |
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| Q |
114 |
ttaaaaatacctaagaatgctctcaaaatgtagacatctaatgtaatgatttgcctttctgccatagtaatatgtggttttcaataccttcgaataattt |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
22905988 |
ttaaaaatacctaagaatgctctcaaaatgtaggcatctaatgtaatgatttgcctttctgccatagttatatgtggttttcaataccttcgatgaattt |
22905889 |
T |
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| Q |
214 |
cttaaacaaatttagaatttactccatttccatccttatgtcatttctaaggacatcctaaaagtggtgtttgcttaataaacaccaaatcttatatggc |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22905888 |
cttaaacaagtttagaatttactccatttccatccttatgtcatttctaaggacatcctaaaagtggtgtttgcttaataaacaccaaatcttatatggc |
22905789 |
T |
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| Q |
314 |
tcatttgacggtaacgataggagagacatcatagaataaattatcatatccgattccgatcttaatttatggttttgtgagcaagtgagctatgataatc |
413 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22905788 |
tcatttgagggtaacgataggagagacatcatagaataaattatcatatccgattccgatcttaatttatggttttgtgagcaagtgagctatgataatc |
22905689 |
T |
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| Q |
414 |
aaggtgca |
421 |
Q |
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| T |
22905688 |
aaggtgca |
22905681 |
T |
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