View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_high_19 (Length: 346)
Name: NF1295_high_19
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 36322645 - 36322335
Alignment:
| Q |
30 |
gtatgtgactataagttaagtgtataagactgtttatgtacctttggacagatttcttatgactatctagtactatcataagacactttgtattaataat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
36322645 |
gtatgtgactataagttaagtgtataagactgtttatgtacctttggacagatttcttatgactatctagtactattataagacactttgtattaattat |
36322546 |
T |
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| Q |
130 |
gttctagacta--atatagggtgttccacaaaatctcaccacaaagccctcaaccgaaaagccccttttaagttcccctgttgattttgtctcgcaccca |
227 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322545 |
gttctagactataatatagggtgttccacaaaatctcaccacaaagccctcaaccgaaaagccccttttaagttcccctgttgattttgtctcgcaccca |
36322446 |
T |
|
| Q |
228 |
aagaacctcacaagaaacattcaacacaagagccctgatgttctctgttttccctctcccgaaagacaccaaccttagcctttaagtttcctaagaatat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322445 |
aagaacctcacaagaaacattcaacacaagagccctgatgttctctgttttccctctcccgaaagacaccaaccttagcctttaagtttcctaagaatat |
36322346 |
T |
|
| Q |
328 |
cctcctttggt |
338 |
Q |
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|||| |||||| |
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| T |
36322345 |
cctcttttggt |
36322335 |
T |
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