View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_high_3 (Length: 758)
Name: NF1295_high_3
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 177 - 729
Target Start/End: Original strand, 17339996 - 17340548
Alignment:
| Q |
177 |
actatattcgtttgtgtgaaagggcgcaatcctagggaaccaaaccattattggctaagtagcaaccccacccttttgcctttgaaaataaatgcatgaa |
276 |
Q |
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| T |
17339996 |
actatattcgtttgtgtgaaagggcgcaatcctagggaaccaaaccattattggctaagtagcaaccccacccttttgcctttgaaaataaatgcatgaa |
17340095 |
T |
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| Q |
277 |
acgcaaatattagagcaaaaatactttagaaatagaccgtattttaaatctatataataaaaccatattctttttcattcactactcattggacatggga |
376 |
Q |
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| T |
17340096 |
acacaaatattagagcaaaaatactttagaaatagaccgtattttaaatctatataataaaaccatattctttttcattcactactcattggacatggga |
17340195 |
T |
|
| Q |
377 |
tattcagtaactacataagccagtccacaaggaaaaattgctaatcttccttcatattttgtgtctttttcaaggtccaagaaaaggacttttttatagt |
476 |
Q |
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| T |
17340196 |
tattcagtaactacataagccagtccacaaggaaaaattgctaatcttccttcatattttgtgttcttttcaaggtccaagaaaaggacttttttatagt |
17340295 |
T |
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| Q |
477 |
atgccttacttattttaaaaaggtgtnnnnnnnnctacaaggaattaaaataagtaagtgggttcacacttttacttgtaaaatacaatcataataccta |
576 |
Q |
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| T |
17340296 |
atgccttacttattttaaaaaggtgtaaaaaaaactacaaggaattaaaataagtaagtggtttcacactttttcttgtaaaatacaataataataccta |
17340395 |
T |
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| Q |
577 |
ttcaaccaaattgttcgattttagatgtgaaatctaagcaattatgtaccagtgtttccattttattttcccaatttgattttaaacttcttcttctctt |
676 |
Q |
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| T |
17340396 |
ttcaaccaaattgttcgattttagatgtgaaatctaagcaattatgtaccaatgtttgcattttattttcccaatttgattttcaacttcttcttctctt |
17340495 |
T |
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| Q |
677 |
tagtttgaattggattcttcttgccattcatgatcctcaagctttgccttaac |
729 |
Q |
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| T |
17340496 |
tagtttgaattggattcttcttgccattcatgatcctcaagctttgccttaac |
17340548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 17339800 - 17339957
Alignment:
| Q |
12 |
atagggcatgtgagaaactcataggatg-----agaaatgtccaaatacaaattgtcagagtggtttctatctgctatatatttaatcctctttctcaaa |
106 |
Q |
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| T |
17339800 |
atagggcatatgagaaactgataggatggaaaaagtaatgtccaaatacaaattgtcagagtggtttctatctgctatatatttaatcctctttctcaaa |
17339899 |
T |
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| Q |
107 |
ccctttgagttattaa-gggtcattttttactctaattgtctttggtagataaatgaa |
163 |
Q |
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| T |
17339900 |
ccctttgagttattaaggggtcattttttactctaattgtctttggtagataaatgaa |
17339957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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