View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295_high_38 (Length: 251)

Name: NF1295_high_38
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295_high_38
NF1295_high_38
[»] chr7 (6 HSPs)
chr7 (52-222)||(21386894-21387064)
chr7 (55-218)||(29644417-29644580)
chr7 (55-222)||(30022668-30022835)
chr7 (55-209)||(33697019-33697164)
chr7 (104-175)||(2372885-2372956)
chr7 (55-113)||(42491215-42491272)
[»] chr5 (6 HSPs)
chr5 (55-222)||(27188189-27188356)
chr5 (55-218)||(13544836-13544999)
chr5 (55-218)||(27341444-27341607)
chr5 (60-218)||(25456021-25456179)
chr5 (55-218)||(38424380-38424543)
chr5 (55-218)||(21361987-21362150)
[»] chr1 (4 HSPs)
chr1 (55-218)||(22388615-22388778)
chr1 (55-218)||(44209365-44209528)
chr1 (55-218)||(43214749-43214912)
chr1 (55-218)||(32814499-32814662)
[»] scaffold0140 (1 HSPs)
scaffold0140 (55-218)||(4888-5051)
[»] chr6 (3 HSPs)
chr6 (55-218)||(32154973-32155136)
chr6 (55-209)||(3377379-3377533)
chr6 (56-220)||(14608320-14608483)
[»] chr4 (5 HSPs)
chr4 (55-218)||(45765026-45765189)
chr4 (55-218)||(35194532-35194698)
chr4 (55-222)||(12595050-12595219)
chr4 (55-222)||(21857889-21858057)
chr4 (55-222)||(21913752-21913920)
[»] chr2 (9 HSPs)
chr2 (56-218)||(10317360-10317522)
chr2 (55-218)||(14252140-14252303)
chr2 (55-218)||(5607072-5607235)
chr2 (55-218)||(9758564-9758727)
chr2 (157-218)||(10315587-10315648)
chr2 (157-209)||(10315960-10316012)
chr2 (157-209)||(10316324-10316376)
chr2 (157-209)||(10317006-10317058)
chr2 (157-204)||(10316654-10316701)
[»] chr3 (1 HSPs)
chr3 (55-218)||(9666003-9666166)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 21387064 - 21386894
Alignment:
Q  52 tatgattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagt 151  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21387064 tatgattcaaggaagagcttaaagagttacttggtgaaggaaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagt 21386965  T
Q  152 tgaggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaatg 222  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  21386964 tgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattaatg 21386894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 29644417 - 29644580
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  29644417 gattcaaggaatagtttaaagagttacttggtgaagggtactatggtaaaggaggattaccaaaattgtttattgaaaagaaatacattgatgaagttga 29644516  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  29644517 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 29644580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 30022668 - 30022835
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30022668 gattcaaggaagagtttaaagagttacttggtgaatggtactatggtaaaggaggattaccaaaagtgcttattgaaatgaaatacattggtggagttga 30022767  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaatg 222  Q
    ||||||| |||||||||||||||| |||||  |||||||||| |||||||||||| ||| ||||||||    
T  30022768 ggaaattcagaaacttcatgatgacaagaaacttgagaaattacttgattgttgtgaaaggattaatg 30022835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 33697164 - 33697019
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||| ||||||| ||||| ||||||||  ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||     
T  33697164 gattcaaggaagagtttaaagaattacttggtgaaggatactatagtaaaggagaattacaaaaagtgtttattgaaaagaaatacattggtggagttg- 33697066  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgt 209  Q
            |||||||||||||||| |||||| ||||||||||| |||||||||||    
T  33697065 --------agaaacttcatgatgacaagaagcttgagaaattgtttgattgttgt 33697019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 2372885 - 2372956
Alignment:
Q  104 aggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttgaggaaatttagaaacttcatga 175  Q
    ||||||||||||||  || ||| |||  ||||| |||||||||||||||||||||||| |||||||||||||    
T  2372885 aggaggattaccaagggtttttgttggtaagaattacattggtggagttgaggaaattgagaaacttcatga 2372956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 42491272 - 42491215
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggatta 113  Q
    ||||||||||||| |||||| ||||| | ||||||||  ||||||||||||||||||||    
T  42491272 gattcaaggaagaacttaaa-agttagttggtgaaggatactatggtaaaggaggatta 42491215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 27188189 - 27188356
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27188189 gattcaaggaagagcttaaagagttacttggtgaagggtactatggtaaaggaagattaccaaaagtgtttattgaaaagaaatacattggtggagttga 27188288  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaatg 222  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||    
T  27188289 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattaatg 27188356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 13544836 - 13544999
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  13544836 gattcaaggaagagcttaaagagttacttggtgaagggtactatggtaaaggaggattaccaaaagtgtttattgaaaaaaaatacattggtagagttga 13544935  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  13544936 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 13544999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 27341444 - 27341607
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27341444 gattcaaggaagagcttaaagagttacttggtgaagagtactatggtaaaagaggattgccaaaagtgtttattgaaaagaaatacattggtggagttga 27341543  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  27341544 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 27341607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 25456179 - 25456021
Alignment:
Q  60 aaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttgaggaaa 159  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25456179 aaggaagagcttaaagagttacttggtgaagggtactatggtaaatgaggattaccaaaagtgtttattgaaaagaaatacattggttgagttgaggaaa 25456080  T
Q  160 tttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    || ||||| |||||||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  25456079 ttcagaaagttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 25456021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 38424380 - 38424543
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |    
T  38424380 gattcaaggaatagcttaaagagttacttggtgaagggtactatggtaaaggaggattatcaaaagtgttttttgaaaagaaatacattggtggagttaa 38424479  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||| ||| |||||| ||||||||| ||||  ||||||| ||| ||||    
T  38424480 ggaaattcagaaacttcatgttgacaagaagcttgagaaatcgcttttttgttgtgaaaggatt 38424543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 21361987 - 21362150
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||| |||||| | ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  21361987 gattcaatgaagagttaaaagagttacttggtggagggtactatggtaaaggaggattaccaaaagtgtttattggaaagaaaaacattgctggagttga 21362086  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||| |||| |||||||||||| ||| ||||    
T  21362087 ggaaattcagaaacttcatgatgacaagaagcttgagtaattacttgattgttgtgaaaggatt 21362150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 22388615 - 22388778
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22388615 gattcaaggaagagtttaaagagttacttggtgaagggtactatggtagaggaggattaccaaaagtgtttagtgaaaagaaatacattggtggagttga 22388714  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  22388715 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 22388778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 44209365 - 44209528
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44209365 gattcaaggaatagcttaaagagttacttggtgaagagtactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacgttggtggagttga 44209464  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||  |||||| ||||||||||||||||||||||| ||| ||||    
T  44209465 ggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttgattgttgtgaaaggatt 44209528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 43214749 - 43214912
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||||||| |||||||||||||||| ||||||||  ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43214749 gattcaaggaaaagcttaaagagttacttggtgaaggatactattgtaatggaggattaccaaaagtgtttattaaaaagaaatacattggtggagttga 43214848  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| ||| ||||    
T  43214849 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggatt 43214912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 32814499 - 32814662
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||||||||||||||||  |||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32814499 gattcaaggaagagcttaaagagttacctggtgaagaatactacggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 32814598  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| ||||| |||||||||| |||||  ||||||||||| ||||||||||| ||| ||||    
T  32814599 ggaaattcagaaatttcatgatgacaagaaacttgagaaattgtttgattgttgtgaaaggatt 32814662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 5051 - 4888
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||||||||| ||| |||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5051 gattcaaggaagaacttgaagagttacttggtgaagcatactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 4952  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||| ||| ||| ||||    
T  4951 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgctgtgaaaggatt 4888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 32155136 - 32154973
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||    
T  32155136 gatttaaggaagagcttaaagagttacttggtgaagagtactatggtaaaggatgattaccaaaagtgtttcttgaaaagaaatacgttggtggagttga 32155037  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  32155036 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 32154973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 3377379 - 3377533
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  3377379 gatttaaggaagagctcaaagagttacttggtgaagggaactatggtaaaggtggattaccaaaagtgtttattggaaggaaatacattggtggagttga 3377478  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgt 209  Q
    ||||||| ||||| | ||||||||||| ||| ||||||||||  |||||||||||    
T  3377479 ggaaattcagaaattacatgatgataaaaagcttgagaaattatttgattgttgt 3377533  T

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Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 14608320 - 14608483
Alignment:
Q  56 attcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttgag 155  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||    
T  14608320 attcaaggaagagcttaaagagttacttggtgaaggatactatggtaaaggaggattaccaaaagtgttttttgaaaagaaatacatttgtggagtt-ag 14608418  T
Q  156 gaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaa 220  Q
    |||||| ||| ||||  |||||| |||||||||||||||||||| |||| |||| ||| ||||||    
T  14608419 gaaattcagagactttgtgatgacaagaagtttgagaaattgctcgattattgtgaaaggattaa 14608483  T

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Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 45765189 - 45765026
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||| |||||||| |||||||||||| | |||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  45765189 gatttaaggaagaacttaaagagttatttggtgaatggtactatggtaaatgaggattaccaaaagtgtttattggaaagaaatacattgttggagttga 45765090  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  45765089 ggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgatt 45765026  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 35194698 - 35194532
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggatt----accaaaagtgtttattgaaaagaaatacattggtggag 150  Q
    ||||||||||| |||||||| |||||||  |||||||| |||||||||||||||||||    | ||||||||||| ||||||||||||||||||||||||    
T  35194698 gattcaaggaatagcttaaatagttacttcgtgaagggtactatggtaaaggaggattgattatcaaaagtgttt-ttgaaaagaaatacattggtggag 35194600  T
Q  151 ttgaggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||    
T  35194599 ttgaggaaattcagaaacttcatgatgacaagaagtttgagaaattgctttattgttgtgaaaggatt 35194532  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 12595219 - 12595050
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattg---gtggagt 151  Q
    |||||||| || |||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||   |||||||    
T  12595219 gattcaagtaaaagcttaaatagttacttggtgaagggtactatggtaaatgaggattaccaaatgtgtttattgaaaagaaatacattggtggtggagt 12595120  T
Q  152 tgaggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaatg 222  Q
    |||||||||| |||||||||||||||  |||||| ||||||||||||||| ||||||| ||| ||||||||    
T  12595119 tgaggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttg-ttgttgtgaaaggattaatg 12595050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 21857889 - 21858057
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagtt-g 153  Q
    ||||||| ||||||||| |||||||||| |||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  21857889 gattcaaagaagagctttaagagttacttggtgaagggttccatggtaaaagaggattaccaaaagtgtttattgaaaagaaatacattggtggagttaa 21857988  T
Q  154 aggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaatg 222  Q
    | |||||| |||||||||||||||| |||||| ||||| ||||||||||| ||||| ||| ||||||||    
T  21857989 aagaaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatg 21858057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 21913752 - 21913920
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagtt-g 153  Q
    ||||||| ||||||||| |||||||||| |||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  21913752 gattcaaagaagagctttaagagttacttggtgaagggttccatggtaaaagaggattaccaaaagtgtttattgaaaagaaatacattggtggagttaa 21913851  T
Q  154 aggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgattaatg 222  Q
    | |||||| |||||||||||||||| |||||| ||||| ||||||||||| ||||| ||| ||||||||    
T  21913852 aagaaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatg 21913920  T

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Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 10317522 - 10317360
Alignment:
Q  56 attcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttgag 155  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  10317522 attcaaggaagagcttaaagagttacttggtgaagggtactatggtaaaggaggattaataaaagtgtttattgaaaagaagtacattggtggagttgag 10317423  T
Q  156 gaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
     ||||| |||||||||||||||| || ||| ||||||||||||||||||||||| ||| ||||    
T  10317422 aaaattcagaaacttcatgatgacaaaaagcttgagaaattgcttgattgttgtgaaaggatt 10317360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 14252140 - 14252303
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    ||||||| ||| |||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14252140 gattcaaagaatagcttaaagagttacttggtgaagggtactatggtaaatgaggattacaaaaagtgtttattgaaaagaaatacattggtggagttga 14252239  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| | |||||||||||||| |||||| ||||||||||||||||| ||||| ||| ||||    
T  14252240 ggaaattcaaaaacttcatgatgacaagaagcttgagaaattgcttgatcgttgtgaaaggatt 14252303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 5607072 - 5607235
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||| |||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  5607072 gattcaagaaagaacttaaagagttacttggtgaaggatactatggtaaaggaggattaccaaaagtgtttattgaaaataaataagttggtggagttga 5607171  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||| ||||    
T  5607172 ggaaattcagaaacttcatgataacaagaagcttgagaaattgcttgattgttgtgaaaggatt 5607235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 9758564 - 9758727
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||| ||||||||||||| |  |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9758564 gattcaaggaagagtttaaagagttacttgacgaagagtactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacgttggtggagttga 9758663  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    | ||||| |||||||||||||||| |||||| |||||||||||||||||| |||| ||| ||||    
T  9758664 gaaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgatttttgtgaaaggatt 9758727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 10315648 - 10315587
Alignment:
Q  157 aaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  10315648 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgatt 10315587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 10316012 - 10315960
Alignment:
Q  157 aaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgt 209  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||| ||||    
T  10316012 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgt 10315960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 10316376 - 10316324
Alignment:
Q  157 aaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgt 209  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||| ||||    
T  10316376 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgt 10316324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 10317058 - 10317006
Alignment:
Q  157 aaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgt 209  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||| ||||    
T  10317058 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgt 10317006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 10316701 - 10316654
Alignment:
Q  157 aaatttagaaacttcatgatgataagaagtttgagaaattgcttgatt 204  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  10316701 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgatt 10316654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 9666166 - 9666003
Alignment:
Q  55 gattcaaggaagagcttaaagagttactcggtgaagggaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 154  Q
    |||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||| ||||||| |||||||||||||| || ||||||    
T  9666166 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattggaaagaaatacattgttgtagttga 9666067  T
Q  155 ggaaatttagaaacttcatgatgataagaagtttgagaaattgcttgattgttgtcaaatgatt 218  Q
    ||||||| | ||||||||| |||| |||||| ||||||||||||||||||||||| ||| ||||    
T  9666066 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggatt 9666003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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