View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1295_high_4 (Length: 650)

Name: NF1295_high_4
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1295_high_4
NF1295_high_4
[»] chr8 (17 HSPs)
chr8 (23-650)||(5920291-5920912)
chr8 (99-465)||(5983554-5983911)
chr8 (157-465)||(5948002-5948298)
chr8 (48-465)||(5958982-5959393)
chr8 (227-465)||(5886717-5886949)
chr8 (335-485)||(5842521-5842671)
chr8 (335-485)||(5849231-5849381)
chr8 (141-216)||(5841883-5841958)
chr8 (141-216)||(5848593-5848668)
chr8 (141-216)||(5886202-5886277)
chr8 (503-650)||(42456825-42456972)
chr8 (143-277)||(5842338-5842466)
chr8 (143-277)||(5849048-5849176)
chr8 (519-633)||(41581075-41581189)
chr8 (23-80)||(5886525-5886582)
chr8 (534-625)||(31645145-31645236)
chr8 (505-561)||(38753716-38753772)
[»] chr2 (13 HSPs)
chr2 (508-645)||(5357552-5357689)
chr2 (375-464)||(42788746-42788835)
chr2 (502-610)||(25271796-25271904)
chr2 (504-649)||(27249739-27249884)
chr2 (506-645)||(29923843-29923982)
chr2 (505-577)||(29699507-29699579)
chr2 (573-645)||(14389320-14389393)
chr2 (601-645)||(4964140-4964184)
chr2 (521-640)||(6069134-6069251)
chr2 (502-563)||(3848157-3848218)
chr2 (506-551)||(11915371-11915416)
chr2 (585-650)||(42013388-42013453)
chr2 (585-649)||(29927727-29927791)
[»] chr4 (6 HSPs)
chr4 (505-646)||(18489634-18489774)
chr4 (497-638)||(12868452-12868594)
chr4 (505-650)||(21512028-21512173)
chr4 (504-650)||(24699347-24699493)
chr4 (505-629)||(9672146-9672270)
chr4 (504-645)||(45073218-45073356)
[»] chr6 (7 HSPs)
chr6 (506-566)||(33629456-33629516)
chr6 (505-564)||(2285561-2285620)
chr6 (504-562)||(3445346-3445404)
chr6 (573-645)||(33929922-33929994)
chr6 (505-562)||(33900099-33900156)
chr6 (505-645)||(27176978-27177118)
chr6 (502-563)||(21611115-21611176)
[»] chr7 (3 HSPs)
chr7 (504-631)||(2729785-2729912)
chr7 (508-563)||(28443764-28443819)
chr7 (506-612)||(7682728-7682834)
[»] chr3 (6 HSPs)
chr3 (506-633)||(54524968-54525095)
chr3 (534-650)||(39028133-39028249)
chr3 (505-560)||(51381055-51381110)
chr3 (588-646)||(48723364-48723422)
chr3 (502-650)||(31984362-31984508)
chr3 (375-459)||(34626432-34626516)
[»] chr5 (2 HSPs)
chr5 (505-646)||(10315728-10315869)
chr5 (391-431)||(34067099-34067139)
[»] chr1 (8 HSPs)
chr1 (505-563)||(28108185-28108244)
chr1 (504-563)||(36979733-36979792)
chr1 (506-563)||(25992971-25993028)
chr1 (585-628)||(33150390-33150433)
chr1 (513-594)||(68900-68980)
chr1 (597-645)||(22023152-22023200)
chr1 (375-459)||(51044664-51044748)
chr1 (505-649)||(46915909-46916053)


Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 23 - 650
Target Start/End: Original strand, 5920291 - 5920912
Alignment:
Q  23 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtattggattttgaatgtgaac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5920291 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtattggattttgaatgtgaag 5920390  T
Q  123 caaattgccattataatcataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcat 222  Q
     |||||||||||||||      ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920391 gaaattgccattataa------tggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcat 5920484  T
Q  223 agttgatcttcatggtgatggttgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtaggggg 322  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5920485 agttgatcttcatggtgatggttgaaatttagaatcacattagggtttgcatttatagggagtaaactttccatagaaccaatatttttattgtaggggg 5920584  T
Q  323 tgagaatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgt 422  Q
    || |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920585 tgtgaatattagaaaatgtggggaaagatggaaagataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgt 5920684  T
Q  423 tcttccaggtaagtgcttggcaatctgagcccacctgtccaaacaaatttaaatctttttgagagaagtactggaaacatttgaaaattgttgttcacac 522  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5920685 tcttccaggtaagtgcttcgcaatctgagcccacctgtccaaacaaatttaaatctttttgagagaattactggaaacatttgaaaattgttgttcacac 5920784  T
Q  523 ttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgagatt 622  Q
    ||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  5920785 ttctaacaaggctaaaacacagcagaaaaatacgtaaatgtctattggccgttaattgttgccagttaaaatatatcggaagttaactgccgatgagatt 5920884  T
Q  623 atattggtaaagtactggtgtttcctag 650  Q
    ||||||||||||||||||||||||||||    
T  5920885 atattggtaaagtactggtgtttcctag 5920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 99 - 465
Target Start/End: Original strand, 5983554 - 5983911
Alignment:
Q  99 tggtattggattttgaatgtgaaccaaattgccattataatcataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtaga 198  Q
    ||||||||||||||||||||||   |||||| |||||||||      ||| ||||||   ||||||||||||||||||||| ||||||||||||||||||    
T  5983554 tggtattggattttgaatgtgagggaaattggcattataat------ggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtaga 5983644  T
Q  199 tttggagatgaggttggatagcatagttgatcttcatggtgat---ggttgaagtttagaatcacattagggtttgcatttatagggagtatactttcca 295  Q
    |||||||||||||||| || | |||| | ||||| ||||| ||   | |||||||| || |||||||||||||||||||||| ||||| |    ||||||    
T  5983645 tttggagatgaggttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattagggtttgcatttaaagggaatgagttttcca 5983744  T
Q  296 tagaaccaatatttttattgtagggggtgagaatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaatt 395  Q
    | |||||||||||   || |||||||||| |||| | |||||||||||||||||||||||| ||| ||||| || ||||||||||||| |||||||||||    
T  5983745 ttgaaccaatatt---atggtagggggtgtgaatttcagaaaatgtggtgaaagatggaataatatcatgacaaaggattttcttctttatggttgaatt 5983841  T
Q  396 ccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctgtccaaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  5983842 ccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaaa 5983911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 157 - 465
Target Start/End: Original strand, 5948002 - 5948298
Alignment:
Q  157 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgat---ggttgaagttta 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |||| | ||||| ||||| ||   | |||||||| |    
T  5948002 atgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggtaatcttgatggttataatgattgaagttga 5948101  T
Q  254 gaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgagaatattagaaaatgtggtgaaagatgg 353  Q
    | |||||||||||||||||||||| ||||| |    ||||||| ||||||||||| |          ||| |     | |||||||||||||||||||||    
T  5948102 ggatcacattagggtttgcatttaaagggaatgagttttccattgaaccaatattat----------ggtca-----tcagaaaatgtggtgaaagatgg 5948186  T
Q  354 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 453  Q
    ||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||    
T  5948187 aataataccatgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcc 5948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 48 - 465
Target Start/End: Original strand, 5958982 - 5959393
Alignment:
Q  48 tgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggt---attggattttgaatgtgaaccaaattgccattataatcataa 144  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||  || | | ||   || ||||||||||||||||  |||||| |||||||||         
T  5958982 tgaccatgtatcttcataagtagaaagattagatattggttgtacaatattttgtgccatcggattttgaatgtgaaggaaattggcattataat----- 5959076  T
Q  145 tggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggt 244  Q
     ||| ||||||   ||||||||||||||||||||| |||||||||| |||  |||||||||||||||||| || | |||| | ||||| ||||||||| |    
T  5959077 -ggtcattgat---gtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttgaatggtataggtaatcttgatggtgatgat 5959172  T
Q  245 ---tgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgagaatattagaaaatgt 341  Q
       ||||||| ||  ||||||| ||||||||||||| |||||      ||||||| |||||| ||||   || ||| |||||| ||| || |||||||||    
T  5959173 gattgaagttgagggtcacattcgggtttgcatttaaagggaaggagttttccattgaaccagtatt---atggtatggggtgtgaacatcagaaaatgt 5959269  T
Q  342 ggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttg 441  Q
    | ||||||||||| | ||| | |||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||     
T  5959270 gatgaaagatggagtaatatcgtgagaatgaattttcttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgtttt 5959369  T
Q  442 gcaatctgagcccacctgtccaaa 465  Q
    |||||||||||||| |||||||||    
T  5959370 gcaatctgagcccatctgtccaaa 5959393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 227 - 465
Target Start/End: Original strand, 5886717 - 5886949
Alignment:
Q  227 gatcttcatggtgatggttgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgag 326  Q
    |||||| ||||| | | ||||||||||| |||||||||||||||||||||| ||| |  | ||||| | |||||||  ||||      ||||||| || |    
T  5886717 gatcttgatggtaaggattgaagtttaggatcacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtatt------gtaggggatgtg 5886810  T
Q  327 aatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttctt 426  Q
    ||||| | |||||| ||||||||||||||   || ||| ||||  || ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5886811 aatatcataaaatggggtgaaagatggaacattatcataagaaatgagttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttctt 5886910  T
Q  427 ccaggtaagtgcttggcaatctgagcccacctgtccaaa 465  Q
    || ||||||||||| ||||| || ||||| |||||||||    
T  5886911 cctggtaagtgcttagcaatttgtgcccatctgtccaaa 5886949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 335 - 485
Target Start/End: Original strand, 5842521 - 5842671
Alignment:
Q  335 aaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaa 434  Q
    |||||| |||||| |||||||  ||| ||| |||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || ||    
T  5842521 aaaatggggtgaaggatggaacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaa 5842620  T
Q  435 gtgcttggcaatctgagcccacctgtccaaacaaatttaaatctttttgag 485  Q
    || ||||||||| || ||||| |||||||||||| |||||| ||| |||||    
T  5842621 gtacttggcaatttgtgcccatctgtccaaacaagtttaaaccttgttgag 5842671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 335 - 485
Target Start/End: Original strand, 5849231 - 5849381
Alignment:
Q  335 aaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaa 434  Q
    |||||| |||||| |||||||  ||| ||| |||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || ||    
T  5849231 aaaatggggtgaaggatggaacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaa 5849330  T
Q  435 gtgcttggcaatctgagcccacctgtccaaacaaatttaaatctttttgag 485  Q
    |||||||| ||| || ||||| |||||||||||| |||||| ||| |||||    
T  5849331 gtgcttggtaatttgtgcccatctgtccaaacaagtttaaaccttgttgag 5849381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 5841883 - 5841958
Alignment:
Q  141 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 216  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5841883 ataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttgga 5841958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 5848593 - 5848668
Alignment:
Q  141 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 216  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5848593 ataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttgga 5848668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 5886202 - 5886277
Alignment:
Q  141 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 216  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  5886202 ataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttgga 5886277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 650
Target Start/End: Original strand, 42456825 - 42456972
Alignment:
Q  503 ttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggc 602  Q
    |||||||||| |||  ||||||||||||||||||||| ||||||||||| ||||||| |||| || | |  |||| |   | ||||||||||  |||  |    
T  42456825 ttgaaaattgctgtatacacttctaacaaggctgaaatacatcagaaaaagacgtaattgtccatcgacaattaactaccgtcggttaaaatccatcaac 42456924  T
Q  603 agttaactgctgatgagattatattggtaaagtactggtgtttcctag 650  Q
    || ||| | | |||||| ||||||||||||| ||||||||||||||||    
T  42456925 agctaattaccgatgaggttatattggtaaattactggtgtttcctag 42456972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 5842338 - 5842466
Alignment:
Q  143 aatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatg 242  Q
    |||||||||||   ||||||||| ||||| || ||||||||||   || ||| | ||||||||| ||| ||| |  | |||| ||||||| ||||||| |    
T  5842338 aatggttattg---atgtctaccattgtaccagtttggtgaaa---acattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgagg 5842431  T
Q  243 gttgaagtttagaatcacattagggtttgcattta 277  Q
     ||||||||||| ||||||||||||||||||||||    
T  5842432 attgaagtttagcatcacattagggtttgcattta 5842466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 5849048 - 5849176
Alignment:
Q  143 aatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatg 242  Q
    |||||||||||   ||||||||| ||||| || ||||||||||   || ||| | ||||||||| ||| ||| |  | |||| ||||||| ||||||| |    
T  5849048 aatggttattg---atgtctaccattgtaccagtttggtgaaa---acattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgagg 5849141  T
Q  243 gttgaagtttagaatcacattagggtttgcattta 277  Q
     ||||||||||| ||||||||||||||||||||||    
T  5849142 attgaagtttagcatcacattagggtttgcattta 5849176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 633
Target Start/End: Complemental strand, 41581189 - 41581075
Alignment:
Q  519 acacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatga 618  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||| || | | ||||| ||| |  | |||||||  ||||| ||||||||| ||||||    
T  41581189 acacttcaaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaagtgtcgtagattaaaattcatcggtagttaactgttgatga 41581090  T
Q  619 gattatattggtaaa 633  Q
      |||||||| ||||    
T  41581089 agttatattgataaa 41581075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 5886525 - 5886582
Alignment:
Q  23 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 80  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5886525 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5886582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 625
Target Start/End: Complemental strand, 31645236 - 31645145
Alignment:
Q  534 ctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgagattata 625  Q
    |||||||||| |||||||||| ||||||| | || ||| ||||| ||  | ||||||||||  |||||||||||| ||| |||||| |||||    
T  31645236 ctgaaacacaccagaaaatgaagtaaatgaccatcggcagttaactgccgtcggttaaaatccatcggcagttaagtgccgatgaggttata 31645145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 561
Target Start/End: Original strand, 38753716 - 38753772
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaat 561  Q
    ||||||||||||| ||||||| ||||||||| ||||| | | ||||| |||||||||    
T  38753716 gaaaattgttgtttacacttcaaacaaggctaaaacatacctgaaaaagacgtaaat 38753772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 508 - 645
Target Start/End: Original strand, 5357552 - 5357689
Alignment:
Q  508 aattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagtta 607  Q
    ||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||| || | | ||||| |||||||||||||| |  |||| ||||||    
T  5357552 aattggtgttcacacttctaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagtta 5357651  T
Q  608 actgctgatgagattatattggtaaagtactggtgttt 645  Q
    ||||| |||||| ||||||||||||| |||| ||||||    
T  5357652 actgccgatgaggttatattggtaaattactagtgttt 5357689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 375 - 464
Target Start/End: Original strand, 42788746 - 42788835
Alignment:
Q  375 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctgtccaa 464  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  42788746 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 42788835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 502 - 610
Target Start/End: Complemental strand, 25271904 - 25271796
Alignment:
Q  502 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcgg 601  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||  || | |||||||  |||||    
T  25271904 tttgaaaattgttgtttacacttcaaacaaggctgaaacacatcagaaaaagacgtaaaggtctatcggcggttaactgccgctgtttaaaattcatcgg 25271805  T
Q  602 cagttaact 610  Q
    |||||||||    
T  25271804 cagttaact 25271796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 504 - 649
Target Start/End: Original strand, 27249739 - 27249884
Alignment:
Q  504 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 603  Q
    |||||||||||||  ||||||| ||||||||||||||||| | ||||| || ||||||||| || ||| ||||| ||  ||| ||||||||  |||||      
T  27249739 tgaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaaagatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcggtg 27249838  T
Q  604 gttaactgctgatgagattatattggtaaagtactggtgtttccta 649  Q
    |||||||| ||||||  |||||||| |||| |||| ||||||||||    
T  27249839 gttaactgatgatgaagttatattgataaattactagtgtttccta 27249884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 645
Target Start/End: Original strand, 29923843 - 29923982
Alignment:
Q  506 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 605  Q
    |||||||||||  |||| | | | |||||||||||||| ||||||| ||| ||||||| ||| | | ||||| ||  ||||||||||||  ||| ||| |    
T  29923843 aaaattgttgtatacacatgtgataaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaat 29923942  T
Q  606 taactgctgatgagattatattggtaaagtactggtgttt 645  Q
    ||||||| |||||| ||||||| ||||| |||||||||||    
T  29923943 taactgccgatgaggttatattagtaaattactggtgttt 29923982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 29699507 - 29699579
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaa 577  Q
    |||||||| | |||| | ||||||||||||||||||||| ||||||| |||||||||||| || ||| |||||    
T  29699507 gaaaattggtattcatatttctaacaaggctgaaacacaccagaaaaagacgtaaatgtccatcggcagttaa 29699579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 573 - 645
Target Start/End: Complemental strand, 14389393 - 14389320
Alignment:
Q  573 gttaattgttgccggttaaaa-tatatcggcagttaactgctgatgagattatattggtaaagtactggtgttt 645  Q
    ||||| || |||||||||||| |  |||||||||||||| |||||||| ||||||| ||||| |||||||||||    
T  14389393 gttaactgctgccggttaaaaatcaatcggcagttaactactgatgaggttatattagtaaattactggtgttt 14389320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 645
Target Start/End: Original strand, 4964140 - 4964184
Alignment:
Q  601 gcagttaactgctgatgagattatattggtaaagtactggtgttt 645  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  4964140 gcagttaactgccgatgagattatattagtaaattactggtgttt 4964184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 640
Target Start/End: Original strand, 6069134 - 6069251
Alignment:
Q  521 acttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgaga 620  Q
    |||||||| ||||||||||||||  | ||||  | |||||| | ||| ||| |||||||   | ||||||||||  |||||||||||||||  |||||||    
T  6069134 acttctaagaaggctgaaacacacaaaaaaa--atgtaaatttttatcggcagttaattaccgtcggttaaaattcatcggcagttaactgtcgatgaga 6069231  T
Q  621 ttatattggtaaagtactgg 640  Q
    |||||||| |||| ||||||    
T  6069232 ttatattgataaattactgg 6069251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 3848218 - 3848157
Alignment:
Q  502 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 563  Q
    ||||| ||||||| ||||||||| ||  || ||||||||||||||||||| ||| |||||||    
T  3848218 tttgagaattgttattcacacttttatgaaagctgaaacacatcagaaaaagacataaatgt 3848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 11915371 - 11915416
Alignment:
Q  506 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaa 551  Q
    ||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  11915371 aaaattggtgtacacacttctaacaagactgaaacacaccagaaaa 11915416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 650
Target Start/End: Complemental strand, 42013453 - 42013388
Alignment:
Q  585 cggttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctag 650  Q
    |||||||||| ||||| ||||||||||    |||||||| |||| |||| ||||||||||||||||    
T  42013453 cggttaaaatttatcgacagttaactgtcattgagattaaattgataaattactggtgtttcctag 42013388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 649
Target Start/End: Complemental strand, 29927791 - 29927727
Alignment:
Q  585 cggttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgtttccta 649  Q
    ||||||||||  ||| |||||||||||| |||||| ||||||||||||  |  ||||||||||||    
T  29927791 cggttaaaatccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgtttccta 29927727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 505 - 646
Target Start/End: Complemental strand, 18489774 - 18489634
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 604  Q
    |||||||| |||| ||||||||||||||| ||||| ||| ||||||| ||| |||||||||| |  | ||||| ||  | ||||||||||  ||| ||||    
T  18489774 gaaaattgatgttaacacttctaacaaggttgaaatacaccagaaaaagacataaatgtcta-tcacagttaactgccgtcggttaaaatccatcagcag 18489676  T
Q  605 ttaactgctgatgagattatattggtaaagtactggtgtttc 646  Q
    |||||||| ||||| |||||||||||||| |||| |||||||    
T  18489675 ttaactgccgatgaaattatattggtaaattactagtgtttc 18489634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 638
Target Start/End: Complemental strand, 12868594 - 12868452
Alignment:
Q  497 aaacattt-gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaata 595  Q
    |||||||| ||||||||||||||| ||||||||||| ||| ||||||| ||| |||  ||||| |||| ||| | | ||||| ||| | ||||| ||||     
T  12868594 aaacatttagaaaattgttgttcatacttctaacaaagctaaaacacaccagtaaaacacgtacatgtttatcgacagttaactgtcgtcggtttaaatt 12868495  T
Q  596 tatcggcagttaactgctgatgagattatattggtaaagtact 638  Q
     ||||| ||||||||| |||||||||||||||| |||| ||||    
T  12868494 catcggtagttaactgatgatgagattatattgataaattact 12868452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 505 - 650
Target Start/End: Complemental strand, 21512173 - 21512028
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 604  Q
    ||||||||||||| ||||||  ||||||| ||||||||| ||||||| |||||||||||| ||  || ||||| ||  ||||||||||||  |||  |||    
T  21512173 gaaaattgttgttgacactttaaacaaggatgaaacacaccagaaaaagacgtaaatgtccatcagcagttaactgcagccggttaaaattgatcaacag 21512074  T
Q  605 ttaactgctgatgagattatattggtaaagtactggtgtttcctag 650  Q
    |||||||| ||| |  |||||||| |||| || | |||||||||||    
T  21512073 ttaactgccgataaagttatattgataaattagtagtgtttcctag 21512028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 650
Target Start/End: Original strand, 24699347 - 24699493
Alignment:
Q  504 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 603  Q
    |||||||||||||| ||| ||| |||| |||| ||||| | ||||||| |||||||||||| || | | ||||| ||  ||| ||||||||  |||||||    
T  24699347 tgaaaattgttgtttacaattcaaacagggctaaaacataccagaaaaagacgtaaatgtccatcgccagttaactgccgccagttaaaatccatcggca 24699446  T
Q  604 gttaactgctgatgagattatattggtaaagtactggtgtttcctag 650  Q
    ||||||| | |||||  |||| ||| |||| |||| |||||||||||    
T  24699447 gttaactaccgatgatgttatgttgataaattactagtgtttcctag 24699493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 629
Target Start/End: Complemental strand, 9672270 - 9672146
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 604  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||| |||| ||||| | || ||  ||||| ||| | ||||||||||  || | | |    
T  9672270 gaaaattgatgttcacagttctaacaatgctgaaacacatcagaaaaagacgaaaatgcccatcggtagttaactgtcgtcggttaaaatccattgactg 9672171  T
Q  605 ttaactgctgatgagattatattgg 629  Q
    |||||||| |||||  |||||||||    
T  9672170 ttaactgccgatgaagttatattgg 9672146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 645
Target Start/End: Complemental strand, 45073356 - 45073218
Alignment:
Q  504 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 603  Q
    |||||||||||||  |||| | | | |||| |||||||||  |||||| || ||||||||| || ||| ||||| ||  ||||||||||||  ||||       
T  45073356 tgaaaattgttgtatacacatgtgataaggttgaaacacactagaaaaagatgtaaatgtccatcggcagttaactgccgccggttaaaatccatcg--- 45073260  T
Q  604 gttaactgctgatgagattatattggtaaagtactggtgttt 645  Q
    ||||||||  ||| || ||||||||||||| |||||||||||    
T  45073259 gttaactgtcgataaggttatattggtaaattactggtgttt 45073218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 566
Target Start/End: Complemental strand, 33629516 - 33629456
Alignment:
Q  506 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtcta 566  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  33629516 aaaattgttgttcgcacttttaacaaggctgaaacacatcagaaaaagacgtaaatgtcta 33629456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 564
Target Start/End: Original strand, 2285561 - 2285620
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtc 564  Q
    |||||||| |||||||||||| ||||||| |||||||||| |||||| ||||||||||||    
T  2285561 gaaaattgctgttcacacttcaaacaaggttgaaacacattagaaaaagacgtaaatgtc 2285620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 3445346 - 3445404
Alignment:
Q  504 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatg 562  Q
    |||||||||||||||| || || |||||||||||||||||| |||||| ||||||||||    
T  3445346 tgaaaattgttgttcatacctcaaacaaggctgaaacacattagaaaaagacgtaaatg 3445404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 645
Target Start/End: Original strand, 33929922 - 33929994
Alignment:
Q  573 gttaattgttgccggttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgttt 645  Q
    |||||||  |||||||||||||  |||||||||||||| | ||||||| ||||||| |||| |||||||||||    
T  33929922 gttaattactgccggttaaaatccatcggcagttaactaccgatgagagtatattgataaattactggtgttt 33929994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 33900099 - 33900156
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatg 562  Q
    ||||||||||||| ||||||| ||||| || |||||||| ||||||| ||||||||||    
T  33900099 gaaaattgttgtttacacttcaaacaatgccgaaacacaccagaaaaagacgtaaatg 33900156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 645
Target Start/End: Complemental strand, 27177118 - 27176978
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 604  Q
    |||||||| |||  || |||||||||||  |||||||||| |||||| |||||||||||  || | | ||||| ||  |||| |||||||  ||||  ||    
T  27177118 gaaaattggtgtgtacgcttctaacaagattgaaacacattagaaaaagacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatag 27177019  T
Q  605 ttaactgctgatgagattatattggtaaagtactggtgttt 645  Q
    |||||||| |||||| |||||||  |||| ||||| |||||    
T  27177018 ttaactgccgatgaggttatattaataaattactgatgttt 27176978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 21611176 - 21611115
Alignment:
Q  502 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 563  Q
    ||||||||||| | |||||| ||  |||| ||||||||||||| |||||| |||||||||||    
T  21611176 tttgaaaattgattttcacattttaaacatggctgaaacacattagaaaaagacgtaaatgt 21611115  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 504 - 631
Target Start/End: Original strand, 2729785 - 2729912
Alignment:
Q  504 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 603  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||||| || ||| ||||| ||   || ||||||||  ||||  |    
T  2729785 tgaaaattgatattcacacttctaacaaggctgaaacacaacagaaaaagacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcgata 2729884  T
Q  604 gttaactgctgatgagattatattggta 631  Q
    |||||| |  |||||| |||||||||||    
T  2729885 gttaacagtcgatgaggttatattggta 2729912  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 28443819 - 28443764
Alignment:
Q  508 aattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 563  Q
    |||||||||||||||||| |||||||||||||||||  |||||| |||||||||||    
T  28443819 aattgttgttcacacttcaaacaaggctgaaacacactagaaaaagacgtaaatgt 28443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 612
Target Start/End: Complemental strand, 7682834 - 7682728
Alignment:
Q  506 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 605  Q
    ||||||| |||| |||||||||| ||||||||||||||||| |||| ||  ||||| |  |||||  ||||| || |||| ||||||||  |||  ||||    
T  7682834 aaaattgctgtttacacttctaataaggctgaaacacatcaaaaaaagatttaaatattcattggtagttaactgctgccagttaaaatccatcaacagt 7682735  T
Q  606 taactgc 612  Q
    |||||||    
T  7682734 taactgc 7682728  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 506 - 633
Target Start/End: Complemental strand, 54525095 - 54524968
Alignment:
Q  506 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 605  Q
    |||||| ||||  |||||||||| |||||||||||||| |||||||   ||||||||||||||||| ||||| ||  |||||||||| |  |||  ||||    
T  54525095 aaaattattgtatacacttctaagaaggctgaaacacaccagaaaaaatcgtaaatgtctattggcagttaactgccgccggttaaattccatcaacagt 54524996  T
Q  606 taactgctgatgagattatattggtaaa 633  Q
    ||||||| |||||| ||||||| |||||    
T  54524995 taactgccgatgaggttatattagtaaa 54524968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 39028249 - 39028133
Alignment:
Q  534 ctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgagattatattggtaaa 633  Q
    |||||||||| ||||||| |||||||||||  || ||| ||||| ||  ||||||||||||  |||| ||||||| ||| ||| || ||||||| |||||    
T  39028249 ctgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccgccggttaaaattcatcgacagttaattgccgataaggttatatttgtaaa 39028150  T
Q  634 gtactggtgtttcctag 650  Q
     |||| |||||| ||||    
T  39028149 ttactagtgttttctag 39028133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 560
Target Start/End: Complemental strand, 51381110 - 51381055
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaa 560  Q
    ||||||||  ||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  51381110 gaaaattgccgtttacacttcaaacaaggctgaaacacaccagaaaaagacgtaaa 51381055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 646
Target Start/End: Complemental strand, 48723422 - 48723364
Alignment:
Q  588 ttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgtttc 646  Q
    ||||||| |||| ||||||| |||| |||||||||||||||||||| |||  |||||||    
T  48723422 ttaaaatgtatcagcagttatctgccgatgagattatattggtaaattaccagtgtttc 48723364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 650
Target Start/End: Original strand, 31984362 - 31984508
Alignment:
Q  502 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcgg 601  Q
    ||||||||||  |||| ||||||| ||||||| ||||| | | |||||||  || |||||||| ||  || ||||| ||  ||||||||||||  |||||    
T  31984362 tttgaaaattactgtttacacttcaaacaaggttgaaatataccagaaaaa-acataaatgtccatcagcagttaactgccgccggttaaaattcatcgg 31984460  T
Q  602 cagttaactgctgatgagattatattggtaaagtactggtgtttcctag 650  Q
    | |||||||||  ||||  ||||||| ||||| || |||||||||||||    
T  31984461 cggttaactgcctatgatgttatatttgtaaatta-tggtgtttcctag 31984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 459
Target Start/End: Original strand, 34626432 - 34626516
Alignment:
Q  375 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctg 459  Q
    |||||||||||   ||||||||||||||||||| | ||||||||| ||||| || ||||| ||    ||||| ||||||||||||    
T  34626432 tttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttgagcccacctg 34626516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 505 - 646
Target Start/End: Complemental strand, 10315869 - 10315728
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 604  Q
    |||||||| |||  ||||||| |  |||||||||  | ||||||||| |||||||||| | || ||| ||||||||  ||  |||||||| |||||||||    
T  10315869 gaaaattgctgtagacacttcaactaaggctgaattatatcagaaaaagacgtaaatgcccatcggcagttaattgccgcgtgttaaaatttatcggcag 10315770  T
Q  605 ttaactgctgatgagattatattggtaaagtactggtgtttc 646  Q
    |||||||| |||||| ||||||| ||||| || |||||||||    
T  10315769 ttaactgccgatgaggttatattagtaaattattggtgtttc 10315728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 34067099 - 34067139
Alignment:
Q  391 gaattccaaaagtttttcacctcattatctgttcttccagg 431  Q
    ||||||||| |||||||||||||||||||||| | ||||||    
T  34067099 gaattccaatagtttttcacctcattatctgtacgtccagg 34067139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 563
Target Start/End: Complemental strand, 28108244 - 28108185
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcag-aaaatgacgtaaatgt 563  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||    
T  28108244 gaaaattgttgttcacacttctaacaaggctgaaacaaaccagaaaaaagacgtaaatgt 28108185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 36979733 - 36979792
Alignment:
Q  504 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 563  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||    
T  36979733 tgaaaattgtttttcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgt 36979792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 563
Target Start/End: Original strand, 25992971 - 25993028
Alignment:
Q  506 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 563  Q
    ||||||| |||||||||||| |||||| |||||| ||||||||||| |||||||||||    
T  25992971 aaaattgatgttcacacttcaaacaagtctgaaatacatcagaaaaagacgtaaatgt 25993028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 628
Target Start/End: Original strand, 33150390 - 33150433
Alignment:
Q  585 cggttaaaatatatcggcagttaactgctgatgagattatattg 628  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  33150390 cggttaaaatatattggcagttaactgctgatgaggttatattg 33150433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 594
Target Start/End: Original strand, 68900 - 68980
Alignment:
Q  513 ttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaat 594  Q
    |||||||||||||||||||  ||||||||||  |||||| ||||||||||||||| | | ||||| ||| | ||||||||||    
T  68900 ttgttcacacttctaacaaaactgaaacacactagaaaa-gacgtaaatgtctatcgacagttaactgtcgtcggttaaaat 68980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 645
Target Start/End: Complemental strand, 22023200 - 22023152
Alignment:
Q  597 atcggcagttaactgctgatgagattatattggtaaagtactggtgttt 645  Q
    |||||||||||||||| |||||| |||||| |||||| |||||||||||    
T  22023200 atcggcagttaactgccgatgaggttatataggtaaattactggtgttt 22023152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 459
Target Start/End: Complemental strand, 51044748 - 51044664
Alignment:
Q  375 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctg 459  Q
    |||||||||||   ||||||||||||||||||| | ||||||||||||||| || ||||| ||    ||||| ||||||||||||    
T  51044748 tttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 51044664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 649
Target Start/End: Original strand, 46915909 - 46916053
Alignment:
Q  505 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaat-gacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 603  Q
    ||||||||||||  | ||||| |  |||||||||||||| || ||||  |||||||||||  || | | ||||| ||||  || || ||||  ||| |||    
T  46915909 gaaaattgttgtatatacttcaactaaggctgaaacacaccaaaaaaaagacgtaaatgttcatcgacagttaactgttttcgattgaaatccatctgca 46916008  T
Q  604 gttaactgctgatgagattatattggtaaagtactggtgtttccta 649  Q
    ||||||||| ||||| || ||||||||||| |||||||||||||||    
T  46916009 gttaactgccgatgaaat-atattggtaaattactggtgtttccta 46916053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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