View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_high_41 (Length: 250)
Name: NF1295_high_41
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 43837176 - 43837001
Alignment:
| Q |
30 |
aatctaaattacatctgcatcacccaaaaaagtgggggacacggaagaatgtttgaaaatgctcaagcaaggcatcatgatatatatttttccataatgt |
129 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43837176 |
aatctaaattacatctgaatcacccaaaaaagagggggacacggaagaatgtttgaaaatgctcaagcaaggcatcctgatatatatttttccataatgt |
43837077 |
T |
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| Q |
130 |
ttcctttctaaaggttaactacttttctcccaaaacattgatttgttctatagctcatctttggtgacttgatcct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43837076 |
ttcctttctaaaggttaactacttttctcccaaaacattgatttgttctatagctcatctttggcgacttgatcct |
43837001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 39872130 - 39871952
Alignment:
| Q |
30 |
aatctaaattacatctgcatcacccaaaaaagtgggggacacggaagaatgtttgaaaatgctcaagcaaggcatcatgatatatatttttccataatgt |
129 |
Q |
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||||||||||||||||| |||||||||||||| |||||| | |||||| |||||||||||||||||||||||||| | | ||||||||||||||||||| |
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| T |
39872130 |
aatctaaattacatctggatcacccaaaaaagagggggaagctgaagaaagtttgaaaatgctcaagcaaggcatcctaacatatatttttccataatgt |
39872031 |
T |
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| Q |
130 |
ttcctttctaaaggtt---aactacttttctcccaaaacattgatttgttctatagctcatctttggtgacttgatcct |
205 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39872030 |
ttcctttctgaaggttaacaactacttttctcccaaaacattgatttgttctatagctcatctttggcgacttgatcct |
39871952 |
T |
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