View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_high_43 (Length: 238)
Name: NF1295_high_43
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 6921259 - 6921378
Alignment:
| Q |
18 |
gtttgatcttccccctcttcctttacacaacccaacaaaccctccctttctataaactcatttgaatcctcaaatcccaaccccatctcagctcaatctt |
117 |
Q |
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| T |
6921259 |
gtttgatcttccccctcttcctttacacaacccaacaaaccctccctttctataaactcatttgaatcctcaaatcccaaccccatctcagctcaatctt |
6921358 |
T |
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| Q |
118 |
tgagttccctcatatatatc |
137 |
Q |
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| T |
6921359 |
tgagttcccccatatatatc |
6921378 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 43616513 - 43616603
Alignment:
| Q |
140 |
atatccacacaaa-ccatattttcaaatcacttctttttcacccaccaactatttgtctatttgtttctaaaactttctccattcatctca |
229 |
Q |
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| T |
43616513 |
atatccacacaaatccatatttttagatcacatggttttcacccaccaactatttatctttttgtttctaaaactttctccactcatctca |
43616603 |
T |
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