View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1295_high_5 (Length: 614)
Name: NF1295_high_5
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Original strand, 42450167 - 42450780
Alignment:
| Q |
1 |
tctcctaagaatttgaaagggtctccattttctgcaagaagaaacagttttgggaatgagagtgtgagaaaaagtcctggttctgttcctagtcctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450167 |
tctcctaagaatttgaaagggtctccattttctgcaagaagaaacagttttgggaatgagagtgtgagaaaaagtcctggttctgttcctagtcctttgt |
42450266 |
T |
|
| Q |
101 |
ttgatccagagattattgcatcctatgaaaaggaactttcagaagaggaggaacaaatcaagagaattgtttttgcaacaccaaaaacacgaagagcgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42450267 |
ttgatccagagattattgcatcctatgaaaaggaactttcagaagaggaagaacaaatcaagagaattgtttttgcaacaccgaaaacacgaagagcgag |
42450366 |
T |
|
| Q |
201 |
aaaatctctcgatacaattgcccttttgaacttgtttgagaacaagtgtcctccgggaggagaaaattctgttgtaatctacacaaccacattgagagga |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450367 |
aaaatctctcgattcaattgcccttttgaacttgtttgagaacaagtgtcctccgggaggagaaaattctgttgtaatctacacaaccacattgagagga |
42450466 |
T |
|
| Q |
301 |
atcagaaagacatttgaggattgtaacaaagttcgatcgatcattgaatcgtattgtgtgtgtttgcgtgagcgcgatgtgtctatggattctgggttta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42450467 |
atcagaaagacatttgaggattgtaacaaagttcgatcgatcattgaatcgtattgtgtgtgtttgcgtgagcgcgatgtgtcaatggattctgggttta |
42450566 |
T |
|
| Q |
401 |
aggaggaattaaggaagcttatgggaatgaaacaagttcaagttcctgttgtggttgtgaagggaaggtttgttggaggagtggatgaagttatgaaatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42450567 |
aggaggaattaaggaagcttatgggaatgaaacaagttcaagttcctgttgtgtttgtgaagggaaggtttgttggaggagtggatgaaattatgaaatt |
42450666 |
T |
|
| Q |
501 |
ggaagatgaaggaaaattaggtgttcttttggaagggattccaagggcattaggagtttgtgaagggtgtggaagtttgaggtttgtgatgtgtaaggaa |
600 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450667 |
ggaagatgaagaaaaattaggtgttcttttggaagggattccaagggcattaggagtttgtgaagggtgtggaagtttgaggtttgtgatgtgtaaggaa |
42450766 |
T |
|
| Q |
601 |
tgtaatggaagttg |
614 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42450767 |
tgtaatggaagttg |
42450780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University