View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1295_high_7 (Length: 567)
Name: NF1295_high_7
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 30 - 560
Target Start/End: Original strand, 34426469 - 34426999
Alignment:
| Q |
30 |
gcagacactaaaagaatcaaatatatcccacaaacaataaacagacaaaatttcatccacctcactgtttatagaagactgcataacaatgaaacaaaat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34426469 |
gcagacactaaaagaatcaaatatatcccacaaacaataaacagacaaaatttcatccacctcactgtttatagaagactgcataacaatgaaacaaaat |
34426568 |
T |
|
| Q |
130 |
agtacctcaaattcaaagcaacnnnnnnnnnnnnnnnngacagtctcagttcccaaataattgagatgatacaaagtggtattgatactgaaactagcac |
229 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34426569 |
aggacctcaaattcaaagcaacaaaaaaaaaccaaaaagacagtctcagttcccaaattattgagatgatacaaagtggtattgatactgaaactagcac |
34426668 |
T |
|
| Q |
230 |
tgttgtgaaaatttctgatcgaaaatatcttgaggcatgtaaactattccaagttctttttatctgtgactatgtatgagagtggcaaaagactcaaatc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34426669 |
tgttgtgaaaatttctgatcgaaaatatcttgaggcatgtaaactattccaagttctttttatctgtgactatgtatgagagtggcaaaagactcaaatc |
34426768 |
T |
|
| Q |
330 |
tatgctattaagaatctgaaaatatctaaactaataatcgagtctgagaccattggtcaagtcaagaaaggattatctaaaaagctacaatatttaaggt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34426769 |
tatgctattaagaatctgaaaatatctaaactaataatcgagtctgagaccattggtcaagtcaagaaaggattatctaacaagctacaatatttaaggt |
34426868 |
T |
|
| Q |
430 |
tgaggcaacatcaaatttcatgctgttcatttgcattgtcaatcacataaagggcacaggatgtttgacatcaggagtacaaagttaatcaagatatgag |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34426869 |
tgaggcaacatcaaatttcatgctgttcatttgcattgtcaatcacataaagggcacaggatgtttgacatcagtagtacaaagttaatcaagatatgag |
34426968 |
T |
|
| Q |
530 |
ataatatttcatagtttatacctctgtggtg |
560 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |
|
|
| T |
34426969 |
ataataattcatagtttatacctctctggtg |
34426999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University