View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_10 (Length: 517)
Name: NF1295_low_10
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 25669714 - 25669280
Alignment:
| Q |
1 |
attaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaacgacattcaacagattgtcagtgacac |
100 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||| |
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| T |
25669714 |
attaggatttggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacac |
25669615 |
T |
|
| Q |
101 |
tagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagtttgctttggagtttatggaagcacca |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25669614 |
tagtttggaagcaaaattggtctttttg-ttgttataacgtttcacgccagaactggatgcttgtatggctagtttgctttggagtttctggaagcacca |
25669516 |
T |
|
| Q |
201 |
ctacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccacc |
300 |
Q |
| |
|
|||| ||||||||| ||||||||||||| | |||| ||| || |||||||||| | |||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
25669515 |
ctacctcaaagtgtaggatgatgttacataaatagctgcgcatgtagttgatacaactcatcatttgttggacgagtggacacttgcaaacgtaaccacc |
25669416 |
T |
|
| Q |
301 |
aacgatgctcgtcaaaattagccctgttctatcactcctctatgcttcaacttcggttggaggattataaaatgatctacatcagcagagccaaacactc |
400 |
Q |
| |
|
|||||||||||||||||||| ||| || ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||| | |
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| T |
25669415 |
aacgatgctcgtcaaaattaaccccgtgctaccactcctctatgcttcaactacggttggaggattggaaaatgatctacatcaacagatgtgaacaccc |
25669316 |
T |
|
| Q |
401 |
cagttggtgcttcaacttctttcctagattcatctc |
436 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||| |
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|
| T |
25669315 |
cgattggtgcttcaacttctttcctagattcttctc |
25669280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 25828186 - 25827865
Alignment:
| Q |
1 |
attaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaacgacattcaacagattgtcagtgacac |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| || | ||||||||||||||||||| ||||||||||||| | |
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|
| T |
25828186 |
attaggatatggctcacatgttttttacttgcccatttacaatgtaagtttggattatggctgtcctttggaacgacattcaatagattgtcagtgatag |
25828087 |
T |
|
| Q |
101 |
tagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagtttgctttggagtttatggaagcacca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||| ||||| ||||||||||||| ||||||||||||||||| || |||||||| |||||||| | |
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|
| T |
25828086 |
tagtttggaagcaaaatcgatctttttgttt-ttacaacgtttcacgccagaactggctacttgtatggctagtttgtttcggagtttacggaagcac-a |
25827989 |
T |
|
| Q |
201 |
ctacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccacc |
300 |
Q |
| |
|
|||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
25827988 |
ctacctcaaagtgtaggatgatgttaaaaagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacgcaaccacc |
25827889 |
T |
|
| Q |
301 |
aacgatgctcgtcaaaattagccc |
324 |
Q |
| |
|
| |||||||||||||||||||||| |
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|
| T |
25827888 |
accgatgctcgtcaaaattagccc |
25827865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 25472413 - 25472103
Alignment:
| Q |
1 |
attaggatttggctcacatgctttttacttgcccatttacaatgcaagtttcgatcctgacctgcctttggaacgacattcaacagattgtcagtgacac |
100 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||||||||| | || || | ||||||||||| |||||||| ||||||||| |||||| |
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|
| T |
25472413 |
attaggatttggctcacttgtcttttacttgcccatttacattgcaagtttggttc-tggctggcctttggaacaacattcaatagattgtcaatgacac |
25472315 |
T |
|
| Q |
101 |
tagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagtttgctttggagtttatggaagcacca |
200 |
Q |
| |
|
|||||||| |||||||||| | |||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
25472314 |
tagtttggc---------gatctttttg-taattacaatgtttcacaccagaactggctacttgtatggctagtttgctttggagtttatcgaagcaccg |
25472225 |
T |
|
| Q |
201 |
ctacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccacc |
300 |
Q |
| |
|
|| | |||| ||| | ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
25472224 |
ctgccacaaaatgtagaatgatgttacaaagataattgctcaagtagttggtaaagctcatcatttgttgtaggagtggacacttgcaaacgcaaccacc |
25472125 |
T |
|
| Q |
301 |
aacgatgctcgtcaaaattagc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25472124 |
aacgatgctcgtcaaaattagc |
25472103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 25429651 - 25429565
Alignment:
| Q |
67 |
tttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattgatctttttgattgttacaacttttcatgccagaac |
154 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| | || || |||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
25429651 |
tttggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatctttttg-ttgttacaacgtttcacggcagaac |
25429565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 25472051 - 25471986
Alignment:
| Q |
371 |
aatgatctacatcagcagagccaaacactccagttggtgcttcaacttctttcctagattcatctc |
436 |
Q |
| |
|
|||||||||||| |||||| | |||||||| |||||||||||||||||||||||| ||| |||| |
|
|
| T |
25472051 |
aatgatctacattagcagacacgaacactccgattggtgcttcaacttctttcctagcttcttctc |
25471986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 24889261 - 24889301
Alignment:
| Q |
67 |
tttggaacgacattcaacagattgtcagtgacactagtttg |
107 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
24889261 |
tttggaacgacattcaacagactgtcactgacactagtttg |
24889301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 25983906 - 25984096
Alignment:
| Q |
119 |
gatctttttgattgttacaacttttcatgccagaactggctgcttgtatggctagtttgctttggagtttatggaagcaccactacttcaaagtgtggga |
218 |
Q |
| |
|
|||||||||| || ||||||| ||||| ||| || ||||||||| | |||| ||| ||| ||||||||||||||||| ||||| || |||||||||| || |
|
|
| T |
25983906 |
gatctttttg-ttattacaacgtttcacgcctgagctggctgctcgcatggttagcttgttttggagtttatggaagtaccacaacctcaaagtgtgaga |
25984004 |
T |
|
| Q |
219 |
tgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccaccaacgatgctc |
310 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| | |||||||||||||||| ||||||||| |||||||| || ||||||||| ||||| |
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|
| T |
25984005 |
tgatgttacagagacaactgctcaagtagttgatacaactcatcatttgttggaagagtggacatttgcaaacgcagccaccaacgttgctc |
25984096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 40518832 - 40518935
Alignment:
| Q |
179 |
tttggagtttatggaagcaccactacttcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcat-ttgttggaggagt |
277 |
Q |
| |
|
|||||| |||||||||| ||| | | ||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||||| || ||||||||||| | |
|
|
| T |
40518832 |
tttggattttatggaaggaccgcaatctcaaagtgtgggatgatgttacatagacggttgctcaaatagttgacatagctcattatattgttggaggatt |
40518931 |
T |
|
| Q |
278 |
ggac |
281 |
Q |
| |
|
|||| |
|
|
| T |
40518932 |
ggac |
40518935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 41837635 - 41837728
Alignment:
| Q |
206 |
tcaaagtgtgggatgatgttacagagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacacaaccac |
299 |
Q |
| |
|
||||||||||| ||||||||| |||| || ||||||| || |||| |||||||||| |||||| |||| || || |||| |||||||||||| |
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|
| T |
41837635 |
tcaaagtgtggtatgatgttagtgagacagatgctcaaatacttgacaaagctcatcgattgttgaaggattgaacgcttgtaaacacaaccac |
41837728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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