View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_11 (Length: 504)
Name: NF1295_low_11
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 383
Target Start/End: Original strand, 26442829 - 26443181
Alignment:
| Q |
30 |
tgtcgcacattaatacatatttgaccttgcaatttattacaattgataccgatatgaatgccaatacaaaagtggcatcctataagaatatgctctctat |
129 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26442829 |
tgtctcacattaacacatatttgaccttgcaatttattacaattgataccgatatgaatgccaatacaaaagtggcatcctataagaatatgctctctat |
26442928 |
T |
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| Q |
130 |
taaacctaagacttatttaatttttgtatgtgtatttccactgatcaaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaagt |
229 |
Q |
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| T |
26442929 |
taaacctaagacttatttaatttt-gtatgtgtatttccaccgattaaacaatcaccctttaatgtccataaatgtcttataattacatgtgaaaaaagt |
26443027 |
T |
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| Q |
230 |
tctaaattaagatctgcatcaacaattgtattgctcaatttttctctataaatattggttcaaatttcaccatttcatattcattcaaagaattcagaat |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
26443028 |
tctaaattaagatctgcatcaacaattgtattgctcaatttttctctataaatattgtttcaactttcaccatttcatattcattcaaagaattcataat |
26443127 |
T |
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| Q |
330 |
tatttccacatgtcgtaacgtaagttgtatatgatcgtggttctggtaaaaagg |
383 |
Q |
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| T |
26443128 |
tatttccacatgtcggaacgtaagttgtatatgatcgtggttctggtaaaaagg |
26443181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 44 - 383
Target Start/End: Original strand, 37242664 - 37243003
Alignment:
| Q |
44 |
acatatttgaccttgcaatttattacaattgataccgatatgaatgccaatacaaaagtggcatcctataagaatatgctctctattaaacctaagactt |
143 |
Q |
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| T |
37242664 |
acatatttgaccttgcaatttattacaattgatactgatatgaatgccaatacaaaagtggcatcctataagaatatgctctctattaaacctaagactt |
37242763 |
T |
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| Q |
144 |
atttaatttttgtatgtgtatttccactgatcaaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaagttctaaattaagatc |
243 |
Q |
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| T |
37242764 |
atttaatttt-gtatgtgtatttccaccgattaaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaagttctaaattaagatc |
37242862 |
T |
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| Q |
244 |
tgcatcaacaattgtattgctcaatttttctctataaatattggttcaaatttcaccatttcatattcattcaaagaattcagaa-ttatttccacatgt |
342 |
Q |
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| T |
37242863 |
agcatcaacaattgtattgctcaatttttctttataaatattgtttcaactttcaccatttcatattcattcaaagaattcagaatttttttccacatgc |
37242962 |
T |
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| Q |
343 |
cgtaacgtaagttgtatatgatcgtggttctggtaaaaagg |
383 |
Q |
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| T |
37242963 |
cgtaacgtaagttgtatatgatcgtggttttggtaaaaagg |
37243003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 20348257 - 20347984
Alignment:
| Q |
30 |
tgtcgcacattaatacatatttgaccttgcaatttattacaattgataccgatatgaatgccaatacaaaagtggcatcctataagaatatgctctctat |
129 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |
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| T |
20348257 |
tgtcgcacattaacacatatttgaccttgaaatttattacaattgataccga-atgaacgccaatacaaaagtggcatcctata--------ctctctat |
20348167 |
T |
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| Q |
130 |
taaacctaagacttatttaatttttgtatgtgtatttccactgatcaaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaa-g |
228 |
Q |
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| T |
20348166 |
tgaacctaatacttatttcatttt-gtatgtgtatttccacaaattaaacaatcaccctttaatgtctataaatgtcttataaatacgtgtgaaaaaaag |
20348068 |
T |
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| Q |
229 |
ttctaaattaagatctgcatcaacaattgtattgctcaatttttctctataaatattggttcaaatttcaccatttcatattca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20348067 |
ttctaaattaagatctgcatcaacaattgtattgctcaatttttctctataaatattggttcacctttcaccatttcatattca |
20347984 |
T |
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