View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_14 (Length: 460)
Name: NF1295_low_14
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 5751297 - 5751012
Alignment:
| Q |
19 |
caataatataagcaaagtgggaccactcccctataatagctaccaatcaatggcaaatgccatacatacccatacccgataccttcatagacaaatatag |
118 |
Q |
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| T |
5751297 |
caataatataagcaaagtgggaccactcccctataatagctaccaatcaatggcaaatgccatacatacccatacccgataccttcatagacaaatatag |
5751198 |
T |
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| Q |
119 |
gcaatcttagtttatggaatcaattaataacaaagaaaggatttgatacctttttgtgtcggctactcatcatccatctaccaaaaagaaaccctcaaga |
218 |
Q |
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| T |
5751197 |
gcaatcttagtttatggaatcaattaataacaaagaaaggatttgatacctttttgtgtcggctactcatcatccatctaccaaaaagaaaccctcaaga |
5751098 |
T |
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| Q |
219 |
aacctcctcattcatcatcactctcctttaaattcaaacccttataatcaacccttcaccaccacctcaaagtaaatcttgcaaac |
304 |
Q |
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| T |
5751097 |
aacctcctcattcatcatcactctcctttaaattcaaacccttataatcaacccttcaccaccacctcaaagtaaatcttgcaaac |
5751012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 5750964 - 5750885
Alignment:
| Q |
352 |
gattcatgcaaaatgggtaattgcgtattcaaaggctttcatcatggagattttgaagaaacaatggtaagaattgtaac |
431 |
Q |
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| T |
5750964 |
gattcatgcaaaatgggtaattgcgtattcaaaggctttcatcatggagattttgaagaaacaatggtaagaattgtaac |
5750885 |
T |
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