View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1295_low_15 (Length: 442)
Name: NF1295_low_15
Description: NF1295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1295_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 99 - 428
Target Start/End: Original strand, 36536455 - 36536784
Alignment:
| Q |
99 |
catccaacactcaacaccttcatattcatcagacaaaatccacaaatctaaccattgttccatacttttactttttaaacaagtaatcaatgaaacagaa |
198 |
Q |
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| T |
36536455 |
catccaacactcaacaccttcatattcatcagacaaaatccacaaatctaaccattgttccatacttttactttttaaacaagtaatcaatgaaacagaa |
36536554 |
T |
|
| Q |
199 |
tccttataaattacaagtttcttataaacttcatcacagtctttaaaagaattaatcggcaactcaatcttgctaataacattgtcaattgaattaaaag |
298 |
Q |
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| T |
36536555 |
tccttataaattacaagtttcttataaacttcatcacagtctttaaaaggattaatcggcaactcaatcttgctaataacattgtcaattgaattaaaag |
36536654 |
T |
|
| Q |
299 |
agataatcacttcatgactaaccttttcagttacctccatagcaatccaaaacaaggttccttccattgtcacattgttctcagtccaaaacaaatgtcc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36536655 |
agataatcacttcatgactaaccttttcagttacctccatagcaatccaaaacaaggttccttccattgtcacattgttctcagtccaaaacaaatgtcc |
36536754 |
T |
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| Q |
399 |
cttcaaaatcaaattttgatcacaaccctt |
428 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36536755 |
cttcaaaatcaaattttgatcacaaccctt |
36536784 |
T |
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